RnoEX0028499 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107100196-107102091:-
Coord C1 exon
chr10:107101965-107102091
Coord A exon
chr10:107101318-107101470
Coord C2 exon
chr10:107100196-107100321
Length
153 bp
Sequences
Splice sites
3' ss Seq
CGCTAGGGCACCTCCCCCAGGTG
3' ss Score
3.73
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTGGCTGTGTGTGAAAAGGCGTTGGCTGAATATCTGGAGACCAAGAGGCTGGCGTTCCCACGGTTCTACTTCGTCTCCTCCGCTGACCTGCTGGACATTCTCTCCAACGGAAACGATCCCGTGGAG
Seq A exon
GTGAGCCGCCACCTGTCCAAACTCTTCGACAGTCTGTGTAAGCTCAAGTTCCGCCTTGATGCTAGCGGAAACCCGATCAAGGTCGGGCTGGGGATGTACAGCAAGGAAGACGAATACATGGATTTCGATAAGGAGTGTGACCTCTCGGGGCAG
Seq C2 exon
GTGGAAGTGTGGCTGAATCGAGTGCTGGACCGAATGTGTGCCACGTTGCGCCACGAAATCCCAGAAGCTGTGGTGACTTACGAGGAGAAGCCCAGGGAGCAATGGATCTTTGACTACCCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
PF083938=DHC_N2=FE(12.1=100)
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTGTGAAAAGGCGTTG
R:
GGCCGGGTAGTCAAAGATCCA
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]