GgaEX7009974 @ galGal4
Exon Skipping
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5912990-5913669:-
Coord C1 exon
chr19:5913531-5913669
Coord A exon
chr19:5913252-5913448
Coord C2 exon
chr19:5912990-5913184
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCGTTCTCCACCTGCTGCAGGCT
3' ss Score
5.85
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CGGTGTGCAGCGGGGAGCTGATGGACACGGCCGGCGTGGTGCTGTCACCCAACTGGCCAGAGGCATACGGCAAAGGCCAGGACTGCATCTGGGGGCTGCACGTGGAGGAGGACAAGCGCGTCATGCTGGACATCCGCGT
Seq A exon
GCTGCGGCTGGGTGCAGGGGACGTCCTCACCTTCTATGACGGGGATGACCTGACAGCACGCATCCTGGGCCAGTACACGGGTGCCCGTGGCCGCTTCAAGCTCTTCGCCTCCAGTGCCGATGTCACCATCCAGTTTCAATCTGACCCCGGTGCCGGCGTCTTTGCCTATCGGCAGGGATTTGTCATCCACTTCTCCG
Seq C2 exon
AGGTGCCCCGCAACGACACGTGCCCTGAGCTGCCTGACATCGCCAACGGCTGGAAGACCGCCTCGCAGCCTGAGCTGCTGCACGGCACCGTCGTCACCTTCCACTGCTACCCCGGCTTCGAGCTGGCTGGTGCCGACCTGCTCATGTGCCACTGGGACCTGACGTGGAGCGGCGACCTGCCATCATGCGAGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.4=93.6)
A:
PF0043115=CUB=PD(58.7=95.5)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCACCCAACTGGCCAGAG
R:
CAGTGGCACATGAGCAGGTC
Band lengths:
252-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]