MmuEX6087802 @ mm9
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77787693-77788842:+
Coord C1 exon
chr11:77787693-77787831
Coord A exon
chr11:77787942-77788138
Coord C2 exon
chr11:77788648-77788842
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTGATCTTCCTCCTCTACAGGCT
3' ss Score
10.2
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGT
Seq A exon
GCTGCGCATAGGCTCTGGGGATGTACTGACCTTCTACGATGGGGATGACCTCACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCCGATGTCACCATCCAGTTCCAGTCAGACCCTGGGACCTCGGCGCTGGGTTACCAGCAAGGATTTGTCATCCACTTCTTTG
Seq C2 exon
AGGTTCCCCGCAACGACACATGTCCAGAGCTACCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTGCACGGCACGGTGGTCACCTATCAGTGCTACCCTGGTTACCAGGTGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACCTAAGCTGGAGTGAGGACCTGCCTTCATGCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-'13-16,'13-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.7=93.6)
A:
PF0043115=CUB=PD(58.3=94.0)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCTCTCTCCAAACTGG
R:
ATACTGGATCCCACCACCTGG
Band lengths:
243-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: