GgaEX6014011 @ galGal3
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7349584-7352722:+
Coord C1 exon
chr15:7349584-7349725
Coord A exon
chr15:7351996-7352192
Coord C2 exon
chr15:7352528-7352722
Length
197 bp
Sequences
Splice sites
3' ss Seq
GACCGAGCTCTTCTTTCCAGCCT
3' ss Score
4.34
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
CAGCCACGTGCGGGGGGGAGCTGACAGCCATGGCCGGGGTGATCCTGTCCCCCAACTGGCCGGAGCCCTACACGGAGGGTGAGGATTGTATCTGGAGAGTCCACGTGGGTGAGGAGAAGCGGCTGTTTCTGGACATCCAACT
Seq A exon
CCTGAACCTCACCAACAGCGACATCCTCACCATTTATGATGGGGACGAGCTCTCTGCCCGCATCCTGGGACAGTACGTTGGCAGCAGTGGCCCCCAGAAGCTCTACTCCTCCAGCCCTGACCTCACTATCCGGTTCCACTCAGACCCTGCTGGGCTCATCTTTGGGAAGGGCCAAGGATTCATCATGAACTACATAG
Seq C2 exon
AGGTGTCCCGCAACGACTCCTGCTCCGACCTGCCCGAGATCCAGAACGGCTGGAAGACCACATCACACACCGAGCTGGTGAGAGGGGCCAAGATCACCTACCAGTGTGACCCAGGCTATGACATCGTGGGGAGCGACACGCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCTTTCTGTGAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.4=91.7)
A:
PF0043115=CUB=PD(58.7=95.5)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATCCTGTCCCCCAACT
R:
GTCGCTCCCCACGATGTCATA
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]