MmuEX6019724 @ mm9
Exon Skipping
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112867422-112890305:-
Coord C1 exon
chr5:112890167-112890305
Coord A exon
chr5:112869834-112870030
Coord C2 exon
chr5:112867422-112867616
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTCTGCCCATCAAGCCT
3' ss Score
4.34
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
CCATGTGTGGTGGGGAGCTCTCTGCTGTGGCTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGTGTGTGGAAGATCCACGTTGGGGAGGAGAAGCGGATCTTCCTGGACATTCAGTT
Seq A exon
CCTTAACCTGAGCAACAGCGACATCCTGACCATCTATGATGGCGATGAGGTTGTGCCCCACGTCCTGGGCCAGTACTTTGGCCACAGCAGCCCTCAGAAGCTGTACTCCTCCACACCGGACCTCACCATCCAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAACTATATAG
Seq C2 exon
AGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGTGACCCAGGCTATGACATTGTGGGGAGTGACACCCTCACCTGCCAATGGGACCTCAGTTGGAGCAGCGACCCGCCGTTTTGTGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153-'8-12,'8-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.4=93.6)
A:
PF0043115=CUB=PD(58.7=95.5)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCCTATGCAGAAGGTGA
R:
GCTCCAACTGAGGTCCCATTG
Band lengths:
251-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: