RnoEX0079959 @ rn6
Exon Skipping
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50201982-50223110:+
Coord C1 exon
chr12:50201982-50202120
Coord A exon
chr12:50217997-50218193
Coord C2 exon
chr12:50222916-50223110
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTCTGCCCATCAAGCCT
3' ss Score
4.34
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
CCATGTGTGGTGGGGAGCTCTCTGCTGTGGCTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGTGTGTGGAAAATCCACGTTGGGGAGGAGAAGCGGATCTTCCTGGACATTCAGTT
Seq A exon
CCTGAATCTAAGCAACAGCGACATCCTGACCATCTATGACGGAGATGAGGTTGTGCCCCACGTCCTGGGCCAATACTTTGGCAACAGCAGCCCTCAGAAGCTGTACTCCTCCACGCCGGACCTCACCATCCAGTTCCACTCGGATCCTGCTGGCCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAACTATATAG
Seq C2 exon
AGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACCACTTCCCACACGGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGCGACCCTGGCTACGACATCGTGGGGAGTGACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCGTTTTGTGAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612-'14-19,'14-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.4=93.6)
A:
PF0043115=CUB=PD(58.7=95.5)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTGGTGGGGAGCTCTC
R:
GTCGCACTGGTATGTGATCCG
Band lengths:
247-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]