BtaEX6073570 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68267008-68294629:+
Coord C1 exon
chr17:68267008-68267146
Coord A exon
chr17:68289195-68289391
Coord C2 exon
chr17:68294435-68294629
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTCTGTCCCCCAAGCCT
3' ss Score
6.82
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
CCATGTGTGGTGGGGAGCTCTCTGCCGTGGCCGGGGTGGTGCTGTCACCAAACTGGCCGGAGCCCTACGTGGAAGGTGAAGACTGTGTCTGGAAGATCCATGTGGGCGAGGAGAAGCGGATCTTCTTAGACATCCAGTT
Seq A exon
CCTGAACCTCAGCAACAGTGACATCCTGACCATCTACGATGGTGACGAGGTCATGCCCCACATCTTGGGACAGTACCTGGGAAACAGCGGCCCCCAGAAGCTGTACTCGTCCACGCCGGACCTAACCATCCAGTTCCACTCGGACCCCGCCGGCCTCATCTTTGGGAAGGGCCAGGGATTCATCATGAACTACATCG
Seq C2 exon
AGGTGTCGAGGAACGACTCCTGCTCTGATTTGCCCGAGATCCAGAACGGCTGGAAAACCACTTCCCACACGGAGCTCGTGAGGGGGGCCCGAATCACCTACCAGTGTGACCCCGGCTACGACATCGTGGGGAGCGACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCATTCTGCGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-'9-15,'9-14,10-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.4=93.6)
A:
PF0043115=CUB=PD(58.7=95.5)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTGGTGGGGAGCTCTC
R:
GGGGTCACACTGGTAGGTGAT
Band lengths:
250-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]