GgaEX6014011 @ galGal4
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr15:7129235-7131797:+
Coord C1 exon
chr15:7129235-7129372
Coord A exon
chr15:7131071-7131267
Coord C2 exon
chr15:7131603-7131797
Length
197 bp
Sequences
Splice sites
3' ss Seq
GACCGAGCTCTTCTTTCCAGCCT
3' ss Score
4.34
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
CCACGTGCGGGGGGAGCTGACAGCCATGGCCGGGGTGATCCTGTCCCCCAACTGGCCGGAGCCCTACACGGAGGGTGAGGATTGTATCTGGAGAGTCCACGTGGGTGAGGAGAAGCGGCTGTTTCTGGACATCCAACT
Seq A exon
CCTGAACCTCACCAACAGCGACATCCTCACCATTTATGATGGGGACGAGCTCTCTGCCCGCATCCTGGGACAGTACGTTGGCAGCAGTGGCCCCCAGAAGCTCTACTCCTCCAGCCCTGACCTCACTATCCGGTTCCACTCAGACCCTGCTGGGCTCATCTTTGGGAAGGGCCAAGGATTCATCATGAACTACATAG
Seq C2 exon
AGGTGTCCCGCAACGACTCCTGCTCCGACCTGCCCGAGATCCAGAACGGCTGGAAGACCACATCACACACCGAGCTGGTGAGAGGGGCCAAGATCACCTACCAGTGTGACCCAGGCTATGACATCGTGGGGAGCGACACGCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCTTTCTGTGAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(41.1=100)
A:
PF0043115=CUB=PD(57.1=95.5)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATCCTGTCCCCCAACT
R:
GTCGCTCCCCACGATGTCATA
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]