RnoEX6048634 @ rn6
Exon Skipping
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64869272-64870515:-
Coord C1 exon
chr10:64870377-64870515
Coord A exon
chr10:64870070-64870266
Coord C2 exon
chr10:64869272-64869466
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTCCCCTTCTACAGGCT
3' ss Score
9.68
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGT
Seq A exon
GCTGCGCATAGGCTCTGGGGATGTACTGACCTTCTACGATGGGGATGACCTGACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCTGATGTCACCATTCAGTTCCAGTCAGACCCTGGGACGTCGGCGCTGGGTTACCAGCAAGGATTTGTCATCCACTTCTTTG
Seq C2 exon
AGGTGCCCCGCAATGACACATGTCCAGAGCTTCCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTGCATGGCACGGTGGTCACCTATCAGTGCTACCCCGGTTACCAGGTGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACCTGAGCTGGAGTGAGGACCTGCCCTCATGCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-'21-14,'21-13,22-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.7=93.6)
A:
PF0043115=CUB=PD(58.3=94.0)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCTCTCTCCAAACTGG
R:
ATACTGGATCCCACCACCTGG
Band lengths:
243-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]