GgaEX7009975 @ galGal4
Exon Skipping
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5912716-5913448:-
Coord C1 exon
chr19:5913252-5913448
Coord A exon
chr19:5912990-5913184
Coord C2 exon
chr19:5912716-5912907
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACCCCCTGCCGTCCCTGCAGAGG
3' ss Score
10.62
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GCTGCGGCTGGGTGCAGGGGACGTCCTCACCTTCTATGACGGGGATGACCTGACAGCACGCATCCTGGGCCAGTACACGGGTGCCCGTGGCCGCTTCAAGCTCTTCGCCTCCAGTGCCGATGTCACCATCCAGTTTCAATCTGACCCCGGTGCCGGCGTCTTTGCCTATCGGCAGGGATTTGTCATCCACTTCTCCG
Seq A exon
AGGTGCCCCGCAACGACACGTGCCCTGAGCTGCCTGACATCGCCAACGGCTGGAAGACCGCCTCGCAGCCTGAGCTGCTGCACGGCACCGTCGTCACCTTCCACTGCTACCCCGGCTTCGAGCTGGCTGGTGCCGACCTGCTCATGTGCCACTGGGACCTGACGTGGAGCGGCGACCTGCCATCATGCGAGCGGG
Seq C2 exon
TCACCACCTGCCGGGACCCCGGGGACGCCGAGCACAGCCGCAGGGTGGTCTCCAGCCCCAAATTCCCAGTGGGGTCCACCGTGCGCTTCGTCTGCGATAAGGGCTACGTGCTGGCGGGCGCCGGGCTCCTCACCTGCCACGACCGCGCATCGGGGGGACCCAAGTGGAGCGACCGCCTGCCCAAATGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACGTCCTCACCTTCTAT
R:
CTGGGAATTTGGGGCTGGAGA
Band lengths:
250-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]