RnoEX6048635 @ rn6
Exon Skipping
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64868062-64870266:-
Coord C1 exon
chr10:64870070-64870266
Coord A exon
chr10:64869272-64869466
Coord C2 exon
chr10:64868062-64868253
Length
195 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTTCTGTGTCTCCAGAGG
3' ss Score
8.81
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTGCGCATAGGCTCTGGGGATGTACTGACCTTCTACGATGGGGATGACCTGACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCTGATGTCACCATTCAGTTCCAGTCAGACCCTGGGACGTCGGCGCTGGGTTACCAGCAAGGATTTGTCATCCACTTCTTTG
Seq A exon
AGGTGCCCCGCAATGACACATGTCCAGAGCTTCCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTGCATGGCACGGTGGTCACCTATCAGTGCTACCCCGGTTACCAGGTGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACCTGAGCTGGAGTGAGGACCTGCCCTCATGCCAGAGAG
Seq C2 exon
TGACATCCTGCCATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCTCAAGTTTCCTGTGGGAGCAACTGTGCAGTATATCTGTGACCAGGGTTTTGTGCTCACGGGTAGCGCCATCCTTACTTGCCATGATCGTCAAGCGGGCAGTCCCAAGTGGAGTGACAGGGCCCCCAAGTGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-'22-17,'22-14,23-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.3=94.0)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGGGATGTACTGACCT
R:
CCACAGGAAACTTGAGGCTGG
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]