DreEX0065580 @ danRer10
Exon Skipping
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24584309-24595294:+
Coord C1 exon
chr15:24584309-24584505
Coord A exon
chr15:24590516-24590710
Coord C2 exon
chr15:24595103-24595294
Length
195 bp
Sequences
Splice sites
3' ss Seq
TAAAATGTTCTGCTTTGCAGAGG
3' ss Score
8.42
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
TCTCCACATGGGAAAGAATGACCTGCTGACTTTCTATGATGGAGATGACCTGACTGCAAAGATACTGGGCCAATACAGCGGCTCACGGCCTCGGTTCAAGCTCTACACCTCTATGGCTGATGTGACCATCCAGTTCCAATCAGACCCTGCTACCAACATCTATGGCTACAACAACGGCTTTGTGGTGCACTTTTTTG
Seq A exon
AGGTTCCTCGTAACGACACATGTCCAGAGCTTCCAGAGATCTCAAATGGCTGGAAGACCACATCCCACCCTGACCTTGTGCATGGCACAGTCGTCACCTATCAGTGTTATCCTGGCTTCGAGGTGGTGGGCACCGAAATGTTGATGTGCCAATGGGATCTGACCTGGAGCGGAGACCTGCCCAGCTGTGAAAGAG
Seq C2 exon
TGCTGTCGTGTCCAGACCCGGGCACAGTAGAGCACAGTCGCAGGGTGATGTCGGGGCCGCGTCTCATCGTGGGCTCCACTGTCCAGTACATCTGTAACAAAGGCTACTCGCTGTCAGGAAACAGCCTCCTTTCTTGCTACCACAGAGACTCCACTGGCCCCAAGTGGAGCGAGAAACTGCCCAAATGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414-'11-14,'11-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.015
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCCAATCAGACCCTGC
R:
CAGTTTCTCGCTCCACTTGGG
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]