GgaEX6014010 @ galGal3
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7351996-7352989:+
Coord C1 exon
chr15:7351996-7352192
Coord A exon
chr15:7352528-7352722
Coord C2 exon
chr15:7352798-7352989
Length
195 bp
Sequences
Splice sites
3' ss Seq
AGTCAGCACTTGCCCTGTAGAGG
3' ss Score
2.39
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CCTGAACCTCACCAACAGCGACATCCTCACCATTTATGATGGGGACGAGCTCTCTGCCCGCATCCTGGGACAGTACGTTGGCAGCAGTGGCCCCCAGAAGCTCTACTCCTCCAGCCCTGACCTCACTATCCGGTTCCACTCAGACCCTGCTGGGCTCATCTTTGGGAAGGGCCAAGGATTCATCATGAACTACATAG
Seq A exon
AGGTGTCCCGCAACGACTCCTGCTCCGACCTGCCCGAGATCCAGAACGGCTGGAAGACCACATCACACACCGAGCTGGTGAGAGGGGCCAAGATCACCTACCAGTGTGACCCAGGCTATGACATCGTGGGGAGCGACACGCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCTTTCTGTGAAAAGA
Seq C2 exon
TTATGTACTGCACAGACCCAGGAGAGGTGGAGCACTCGACTCGCCTCATCTCCGACCCCGTGCTGCTGGTGGGCACCACCATCCAGTACACCTGCAATCCTGGCTTCGTGCTGGAGGGCAGCTCACTGCTCACCTGCTACAGCCGTGAGACCGGGACTCCCATCTGGACCTCACGGCTCCCACACTGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGAAGCTCTACTCCTCC
R:
CTGTAGCAGGTGAGCAGTGAG
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]