RnoEX0079960 @ rn6
Exon Skipping
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50217997-50225966:+
Coord C1 exon
chr12:50217997-50218193
Coord A exon
chr12:50222916-50223110
Coord C2 exon
chr12:50225775-50225966
Length
195 bp
Sequences
Splice sites
3' ss Seq
AAGATGTCTTTGTTTTAAAGAGG
3' ss Score
3.22
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CCTGAATCTAAGCAACAGCGACATCCTGACCATCTATGACGGAGATGAGGTTGTGCCCCACGTCCTGGGCCAATACTTTGGCAACAGCAGCCCTCAGAAGCTGTACTCCTCCACGCCGGACCTCACCATCCAGTTCCACTCGGATCCTGCTGGCCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAACTATATAG
Seq A exon
AGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACCACTTCCCACACGGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGCGACCCTGGCTACGACATCGTGGGGAGTGACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCGTTTTGTGAAAAGA
Seq C2 exon
TTATGTACTGTACTGACCCCGGGGAGGTAGAGCACTCCACCCGCCTCATCTCAGACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACACCTGTAGCCCTGGGTTTGTGCTTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCGAGACAGGAACTCCCATCTGGACGTCTCGCCTGCCCCACTGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612-'20-21,'20-19,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAACAGCGACATCCTGAC
R:
CTAGCAGCACAGGGTCTGAGA
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]