DreEX6089842 @ danRer10
Exon Skipping
Gene
ENSDARG00000100594 | sez6l
Description
seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
Coordinates
chr10:44812888-44818764:+
Coord C1 exon
chr10:44812888-44813084
Coord A exon
chr10:44816346-44816540
Coord C2 exon
chr10:44818573-44818764
Length
195 bp
Sequences
Splice sites
3' ss Seq
CATTGTTGTTTGTTTTTCAGAGG
3' ss Score
9.24
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GCTGAATCTGAGCGATAGTGATATGCTCACTATCCTGGATGGGGATGAAGTCACCACACGTATTCTGGGTCAGTTTGTGGGCGGCACGAGTCCCTTTAAGATGTCGTCCTCCAGCCCAGACCTCACCATCAGCTTCCACTCGGACCCGGCCGGCCTGGTGTTCGGGAAAGGCGAAGGCTTCATCATCAACTACATGG
Seq A exon
AGGTGTCCCGCAACGATTCGTGTCCAGATCTGCCTGAGATTCAGAACGGCTGGAAAAGCACGTCTCACGCAGCGCTGGTGCGCGGAGCCCACATCACATACCAGTGCGACCCCGGGTACGACCTAGTGGGCAGCGAAACACTCATCTGTCAAGTGGACCTGAGCTGGAGCACACAGCCTCCGTTCTGTGAGAAGA
Seq C2 exon
TCATGTATTGTACAGACCCGGGACATGTCGATCACTCCACACGCACACTCTCTGACCCCAAACTGCTAGTTGGCACCACCATCCAGTACAGCTGCACACCCGGATTCATCCTGCAGGGCGGCGCCACACTCACCTGCTATGGCCGAGAGCCCGGCACCCCGGTGTGGACATCCCACCTTCCACACTGCGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100594-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCACTATCCTGGATGGGG
R:
TGGTGCCAACTAGCAGTTTGG
Band lengths:
252-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]