MmuEX6019725 @ mm10
Exon Skipping
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112436283-112441010:-
Coord C1 exon
chr5:112440814-112441010
Coord A exon
chr5:112438402-112438596
Coord C2 exon
chr5:112436283-112436474
Length
195 bp
Sequences
Splice sites
3' ss Seq
AGGTGCTCTTTGTTTTAAAGAGG
3' ss Score
4.18
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CCTTAACCTGAGCAACAGCGACATCCTGACCATCTATGATGGCGATGAGGTTGTGCCCCACGTCCTGGGCCAGTACTTTGGCCACAGCAGCCCTCAGAAGCTGTACTCCTCCACACCGGACCTCACCATCCAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAACTATATAG
Seq A exon
AGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGTGACCCAGGCTATGACATTGTGGGGAGTGACACCCTCACCTGCCAATGGGACCTCAGTTGGAGCAGCGACCCGCCGTTTTGTGAAAAAA
Seq C2 exon
TTATGTACTGTACTGACCCCGGGGAGGTGGAGCACTCCACCCGCCTCATTTCAGACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACACCTGTAGCCCTGGCTTTGTGCTTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCGAGACAGGAACTCCCATCTGGACATCTCGCCTGCCCCACTGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153-'25-22,'25-20,26-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCGACATCCTGACCATCT
R:
ACTAGCAGCACAGGGTCTGAA
Band lengths:
253-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types