BtaEX6073569 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68289195-68295138:+
Coord C1 exon
chr17:68289195-68289391
Coord A exon
chr17:68294435-68294629
Coord C2 exon
chr17:68294947-68295138
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATGACATTTTTGTTTTAAAGAGG
3' ss Score
5.1
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
CCTGAACCTCAGCAACAGTGACATCCTGACCATCTACGATGGTGACGAGGTCATGCCCCACATCTTGGGACAGTACCTGGGAAACAGCGGCCCCCAGAAGCTGTACTCGTCCACGCCGGACCTAACCATCCAGTTCCACTCGGACCCCGCCGGCCTCATCTTTGGGAAGGGCCAGGGATTCATCATGAACTACATCG
Seq A exon
AGGTGTCGAGGAACGACTCCTGCTCTGATTTGCCCGAGATCCAGAACGGCTGGAAAACCACTTCCCACACGGAGCTCGTGAGGGGGGCCCGAATCACCTACCAGTGTGACCCCGGCTACGACATCGTGGGGAGCGACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCATTCTGCGAGAAAA
Seq C2 exon
TCATGTACTGCACCGACCCCGGGGAAGTGGACCACTCGACCCGCTTGATTTCTGACCCTGTGCTGCTGGTGGGCACCACCATCCAGTACACCTGCAACCCAGGCTTCGTGCTGGAGGGGAGCTCGCTCCTGACCTGCTACAGCCGCGAGACCGGCACCCCCATCTGGACCTCTCGCCTGCCCCACTGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-'10-16,'10-15,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAGTGACATCCTGACCA
R:
CAGCAGCACAGGGTCAGAAAT
Band lengths:
254-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]