GgaEX7010948 @ galGal4
Exon Skipping
Gene
ENSGALG00000000396 | METTL2A
Description
Methyltransferase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHP8]
Coordinates
chr27:2342069-2344617:+
Coord C1 exon
chr27:2342069-2342175
Coord A exon
chr27:2342382-2342447
Coord C2 exon
chr27:2344139-2344617
Length
66 bp
Sequences
Splice sites
3' ss Seq
TAAATCCTTCTTGCCCTTAGGTC
3' ss Score
9.98
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGCAGTGTGTCATTAACAAACTGAGTCGCCTTCTGAAACCAGGAGGAATGATTTTGTTACGGGATTATGGCCGTTACGACCTAGCCCAGCTTCGGTTCAAGAAAG
Seq A exon
GTCAGTGTCTGTCTGCTAACTTCTATGTGAGAGGTGATGGCACCAGAGTCTACTTCTTCACCCAAG
Seq C2 exon
ATGAATTAGATGATCTCTTCACAAGAGCTGGCCTGCAGAAAATACAGAATCTGGTTGATCGTCGACTGCAAGTGAACCGTGGGAAGCAAATGACAATGTATCGAGTATGGATCCAGTGCAAATACCAAAAGCCTGCTGGCCCTCAGCTGTGAGGAAGCAGGGCATGCTCTGTCAGATTTTATCCTCTTCGTGGCCATGTGCAGTCTCCTCCTGGTGAGATGTATTGTTGGGGAAGTCAGTGTGCACAGAACCTCAGTGCCTTTTATAGTGCCTAGCATCACTTCAAATGAGTTTTGCTAAGGACAAATGGTCTAGGAGGAGACCAACCACTGTTTAAGGTGTCTTGCTACTGGGCTGGGTTTTTAAAGTTTATAGTTTTTAACAACATAAGAAGTAGTCATGCTAAGAGCTCAACCAAGTTGAGTAGCAAGCCTTTCTTACTGTGGATTTCTACATGAAACAAGATCTTCAACCTCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396-'16-13,'16-11,17-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(18.8=100),PF118993=DUF3419=FE(40.4=100)
A:
PF134891=Methyltransf_23=FE(11.5=100),PF118993=DUF3419=FE(24.7=100)
C2:
PF134891=Methyltransf_23=PD(8.4=31.4),PF118993=DUF3419=PD(3.4=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCCTTCTGAAACCAGGAG
R:
TGTCATTTGCTTCCCACGGTT
Band lengths:
176-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]