MmuEX6090405 @ mm10
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:105135338-105140394:+
Coord C1 exon
chr11:105135338-105135444
Coord A exon
chr11:105137719-105137784
Coord C2 exon
chr11:105139561-105140394
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTCGTGTAACTGCAGGTC
3' ss Score
7.17
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATGCAGAAAGCGATCAGCAAGCTAAGCCGACTCCTGAAGCCTGGAGGGGTGATGCTTCTTCGAGACTATGGCCGCTATGACATGGCTCAACTTCGGTTTAAGAAAG
Seq A exon
GTCAGTGTCTATCTGGAAACTTCTATGTGAGAGGTGATGGCACCAGAGTTTACTTCTTCACACAAG
Seq C2 exon
GTGAGCTGGATACGCTCTTCACCGCTGCTGGCCTGGAGAAGGTGCAGAACCTGGTGGATCGCCGCTTGCAGGTGAATCGAGGGAAACAGCTGACCATGTACCGCGTCTGGATTCAGTGCAAATACAGCAAGCCTCTAGCACTCCGCTCCAGCCAACATGTGCCCATTCCCCACGCCACAGAAAGTTCTTCACATTCGGGGCTTTTGTAAGAAGACATCTGTAGACAGCGGCTTGTTGATGATGGACAGTCTGGGGATTCAAGGAGCTCTAACTTTGAGCCTAAGAACAACTACTTTCCGGTTTTTAGCCAGGTGCAATGACACATGCCTTTAAACCCAGCACTCAGGAGGCAGAGGCAGACAGATCTCTGAGTTTGATGACAGCCAGTGATACACAGAGAAATCCTGTCTCCAAAAGCAAACCAAAAAAGTGTGGTTTTATTTCTAAAGCCCATTAATGCGTATTTTCTGGAGTTCGTTTTATTAATATCATTGGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691_MULTIEX2-4/5=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF082427=Methyltransf_12=PD(17.3=48.6)
A:
PF134891=Methyltransf_23=FE(11.8=100)
C2:
PF134891=Methyltransf_23=PD(8.6=22.9)
Main Skipping Isoform:
ENSMUST00000021030fB12769
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGTGATGCTTCTTCGAGA
R:
CACTGAATCCAGACGCGGTAC
Band lengths:
180-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types