RnoEX0054027 @ rn6
Exon Skipping
Gene
ENSRNOG00000006131 | Mettl2b
Description
methyltransferase like 2B [Source:RGD Symbol;Acc:1310240]
Coordinates
chr10:93360969-93367061:+
Coord C1 exon
chr10:93360969-93361075
Coord A exon
chr10:93364862-93364927
Coord C2 exon
chr10:93366991-93367061
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTGTGTAACTGCAGGTC
3' ss Score
8.49
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATGCAGAAAGCTATCAGCAAGCTAAGCAGACTCCTGAAGCCTGGAGGGGTGATGCTTCTTCGAGACTATGGCCGCTATGACATGGCTCAGCTTCGGTTTAAAAAAG
Seq A exon
GTCAGTGTCTGTCTGGAAATTTCTATGTGAGAGGTGATGGCACCAGAGTTTACTTCTTCACACAAG
Seq C2 exon
ATGAGCTGGATACACTCTTCACTGCTGCGGGTCTGGAAAAGGTGCAGAACGTGGTGGATCGACGCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006131_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(19.1=100)
A:
PF134891=Methyltransf_23=FE(11.7=100)
C2:
PF134891=Methyltransf_23=PD(8.5=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGAAAGCTATCAGCAAGCT
R:
CGTCGATCCACCACGTTCTG
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]