DreEX0046149 @ danRer10
Exon Skipping
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3558424-3563495:+
Coord C1 exon
chr9:3558424-3558530
Coord A exon
chr9:3560993-3561058
Coord C2 exon
chr9:3563207-3563495
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTGATTGACTTTCTACAGGTC
3' ss Score
8.65
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGCTCAGGCTGTGGTGAGGGGTTTAGCGGGACTCCTGAAGCAGGGAGGAATGGTGCTGTTCAGAGACTACGGCAGATACGATCTGTCACAGCTCAGATTTAAGAAAG
Seq A exon
GTCAGTGTTTGTCTGAAAACTTCTATTCTCGACAGGATGGCACCTGTGTGTATTTCTTTACTAAAG
Seq C2 exon
ACGAGGTTCATGGTCTGTTTTCTGCTGCTGGATTGGAGGAGCTTCAGAATCTGGAGGACAGGAGGCTGCAGGTGAACAGAGGGAAGAAGATACTGATGCACAGAGTGTGGATGCAGAGCAAATACCGCAAACCAGAGAAATGATGAACAATTAAACGAACTCTTTTTAGACTGAGAAGCAGGGATGGACAGTATTTCTAATAGTATTTTATCATTTGTATTTGGGCTTGTAGTTTTAAAATACTTGGTAAGAAGTCTACATGATGGTGTCATAAAATTGAGGCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(15.4=100)
A:
PF134891=Methyltransf_23=FE(9.4=100)
C2:
PF134891=Methyltransf_23=PD(6.8=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTAGCGGGACTCCTGAAGC
R:
TCTTCCCTCTGTTCACCTGCA
Band lengths:
174-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]