GgaEX1035995 @ galGal3
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
NA
Coordinates
chr7:19512153-19513231:+
Coord C1 exon
chr7:19512153-19512259
Coord A exon
chr7:19512352-19512417
Coord C2 exon
chr7:19513005-19513231
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTCAAATTTCATAGGTC
3' ss Score
9.48
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATGCAACAGGTTGTAAATAGATTGGTTAAACTACTGAAACCTGGAGGGATACTGTTATTTCGAGACTATGGAAGATACGATACAGCTCAACTTCGTTTTAAAAAAG
Seq A exon
GTCATTGCTTGTCAGAAAATTTTTATGTACGAGGAGATGGAACCAGAGTATATTTCTTTACCAAAG
Seq C2 exon
AAGAGGTACAGAACATGTTCACTTTGGCTGGATTAACTGAAATACAGAATTTAGTTGATCGTCGATTACAAGTAAATAGGAAGAAAAAAGTGAAAATGCAGCGAGTTTGGGTACAAGGCAAGTTCCAAAAACCATTGCTGCTCTCTCTTAATAATCCTGAAGAAACCACCAAGAGGCATCCTTATGGATAACTGTACTGTTAACTTAAGAAACAGAAACAAATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564-'9-13,'9-11,10-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(19.0=100)
A:
PF134891=Methyltransf_23=FE(11.6=100)
C2:
PF134891=Methyltransf_23=PD(8.5=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACCTGGAGGGATACTGT
R:
CCCAAACTCGCTGCATTTTCA
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]