BtaEX6009087 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016430 | METTL8
Description
Bos taurus methyltransferase like 8 (METTL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001075288]
Coordinates
chr2:25153593-25154865:+
Coord C1 exon
chr2:25153593-25153699
Coord A exon
chr2:25153835-25153900
Coord C2 exon
chr2:25154658-25154865
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTTGTCACAATTTTTTTTAGGAC
3' ss Score
8.93
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GATGCAAGGTGTTATAAACCGACTGTCCAAGTTACTGAAACCTGGGGGAATGCTGTTATTTCGGGACTATGGAAGATATGATAAGACTCAGCTTCGTTTTAAAAGAG
Seq A exon
GACATTGTTTATCTGAAAATTTTTATGTTCGAGGAGATGGCACCAGAGCATATTTCTTTACAAAAG
Seq C2 exon
GGGAAGTGCACAATATGTTCTGTAAGGCTGGGTTAGATGAGAAGCAAAATCTGGTTGATCGTCGCTTACAAGTTAATAGGAAAAAAAAAGTGAAAATGCACCGAGTGTGGGTTCAAGGCAAATTCCAGAAGCCATTACACTTGACTCAAAAAAGCTCCAACTTGGTATTTTCAGTCCTTTCTCATGAATGAACTATGTATCATGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016430-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(19.4=100)
A:
PF134891=Methyltransf_23=FE(11.8=100)
C2:
PF134891=Methyltransf_23=PD(8.6=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTGGGGGAATGCTGTT
R:
CCCACACTCGGTGCATTTTCA
Band lengths:
182-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]