MmuEX0028763 @ mm10
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70964561-70967156:-
Coord C1 exon
chr2:70967050-70967156
Coord A exon
chr2:70966448-70966513
Coord C2 exon
chr2:70964561-70965679
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTGTCATATTTTAGGGC
3' ss Score
11.24
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GATGCAAGCTGTTGCCCACCGACTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGATAATGCTCAGCTTCGTTTTAAGAAAG
Seq A exon
GGCGTTGTTTATCTGAAAATTTTTATGTCCGAGGAGATGGTACCAGAGCTTATTTCTTTACAAAAG
Seq C2 exon
GGGAAATCCGCCGTATGTTCTGCGAGGCTGGATTACACGAAAAGCAAAATCTGGTTGATCATCGCTTGCAAGTGAACAGGAAAAAGCAAGTGCAGATGCACCGAGTGTGGATTCAAGGAAAATTCCAGAAACCATCGCCCTGGACTCCACAGAGTGGAAATTAGCATTCACTGCATTCTCAGGACCGAACTATGTGTCATGTTAAAGTATGAACCCAGGGCCTGATACTGTTCAAAGACTTCTCTTCCAGAGATGAGCAGAAGAGCATCCGCAGCTCTGCTGGTCTGCTGTCAGTGCTCTCAGGACATTTTAAGAACAAGGATGTGACTTGAAAGAGTCTCCCACCCTCTGGGTTTCCAGAACTTGAAATGTATGTTTGGTTTTGTTTCATCTAACCATGTTCCCTTGAATTGTATGACTTTGAATTAAGAAGCGTATAGTTTTGAGAAATGTAACCCGTCCATGTTTTAGAAGTGGAAAAATGATCTACTTTATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF082417=Methyltransf_11=PD(30.8=55.6)
A:
PF134891=Methyltransf_23=FE(11.6=100)
C2:
PF134891=Methyltransf_23=PD(8.4=29.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGTCCAGGTTGCTGAAG
R:
TTCCTGTTCACTTGCAAGCGA
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types