RnoEX0003010 @ rn6
Exon Skipping
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57256916-57260261:-
Coord C1 exon
chr3:57260155-57260261
Coord A exon
chr3:57259154-57259219
Coord C2 exon
chr3:57256916-57258485
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTATTATATTTTAGGGC
3' ss Score
11.33
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GATGCAAGCTGTCATCCACCGGCTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGACAATGCTCAGCTTCGCTTTAAAAAAG
Seq A exon
GGCGTTGTTTATCTGAAAATTTTTACGTCCGAGGGGATGGTACCAGAGCCTATTTCTTTACAAAAG
Seq C2 exon
GGGAGATCCACCGTATGTTCTGCGAGGCCGGATTACATGAAAAGCAAAATCTGGTTGATCATCGCTTGCAAGTTAATAGGAAAAAGCAAATACAAATGCACCGAGTGTGGGTTCAAGGGAAATTCCAGAAACCATCGTGCTGGACTCCACGGAGTGCAGATGAGCACGCTCTCCCTTCTCCAGACTGAACTGTTAAAGTAGGAAACCAGGGCATGGTACCGTTCAAAGGCTTACGAGCAGGAGAGCATCTGCAGCTCTGCTGGCCTGCTATCAGTGCTCTTGGGACATTTTAAGAACACAGACGTGACTTGAAAGAGTGTCCTACCCTCTGGGTTTTCAGAACTTGAAAAATGTTTGGTTTTGTTTCATCTAACCACGTTCCCTTGAATGGTATGACTTTGAATTAAGTAGCTGATATAAGGCATATAGTTTTGCAACCCATCCATGTTTTAGAAGTGGAAATATTATCTACTTTATTATTGGGTGTGGTAAAGCAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF082417=Methyltransf_11=PD(22.5=55.6)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGACAATGCTCAGCTTCGC
R:
CCAGCACGATGGTTTCTGGAA
Band lengths:
174-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]