GgaEX1035995 @ galGal4
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr7:17559813-17560894:+
Coord C1 exon
chr7:17559813-17559919
Coord A exon
chr7:17560013-17560078
Coord C2 exon
chr7:17560668-17560894
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTCAAATTTCATAGGTC
3' ss Score
9.48
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATGCAACAGGTTGTAAATAGATTGGTTAAACTACTGAAACCTGGAGGGATACTGTTATTTCGAGACTATGGAAGATACGATACAGCTCAACTTCGTTTTAAAAAAG
Seq A exon
GTCATTGCTTGTCAGAAAATTTTTATGTACGAGGAGATGGAACCAGAGTATATTTCTTTACCAAAG
Seq C2 exon
AAGAGGTACAGAACATGTTCACTTTGGCTGGATTAACTGAAATACAGAATTTAGTTGATCGTCGATTACAAGTAAATAGGAAGAAAAAAGTGAAAATGCAGCGAGTTTGGGTACAAGGCAAGTTCCAAAAACCATTGCTGCTCTCTCTTAATAATCCCGAAGAAACCACCAAGAGGCATCCTTATGGATAACTGTACTGTTAACTTAAGAAACAGAAACAAATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564-'17-24,'17-22,18-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(19.1=100)
A:
PF134891=Methyltransf_23=FE(11.7=100)
C2:
PF134891=Methyltransf_23=PD(8.5=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACCTGGAGGGATACTGT
R:
CCCAAACTCGCTGCATTTTCA
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]