GgaEX7010958 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2683362-2688807:+
Coord C1 exon
chr27:2683362-2683385
Coord A exon
chr27:2684222-2684433
Coord C2 exon
chr27:2688379-2688807
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCATCCTATTTCAGAGG
3' ss Score
9.72
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGGGAGGGATGGGTCTGAGTGGAA
Seq A exon
AGGCTTCCCACGTGAAACCCAACCCTCCAAACTCCACCTCAGACTCGGACCTCATGAAGTACCGCACCATCAGCCAGATCCCCCAGTTCACCCTCAACTTCGTAGAGTTCAACCTGGAGAAGCACCGCTCGGGCTCCACCACGGAGATTGAGATCATTGCACCCCACAAAGTGACGGAGCGCACGCAGAACGTCACCGAGAAGGTCACACAG
Seq C2 exon
GTGCTGTCCCTGGGGGCTGATGTCCTCCCCGAGTACAAGCTCCAGGCACCACGCATCCATCGATGGACCATCCTGCACTACAGTCCCTTCAAGGCCGTGTGGGATTGGCTCATCCTGCTGCTGGTCATCTACACGGCTGTCTTCACCCCCTACTCAGCCGCCTTCCTGCTCAATGAGGAGCAGGGGGAGGAGAAGCACTGGAACTGCAGCTACTCCTGTGACCCACTCAACATCATCGACCTCATCGTGGACATCATGTTCATCGTGGACATTGTCATCAACTTCCGCACCACCTACGTCAACATCAACGACGAGGTGGTGAGCCACCCGGGCAAGATTGCCATCCACTACTTCAAGGGCTGGTTCCTCATTGACATGGTGGCTGCCATCCCCTTTGATCTGCTCATCTTCCGCTCCGGCTCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505-'5-8,'5-7,6-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.310 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.0=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGATGGGTCTGAGTGGAA
R:
TGTCCACGATGAACATGATGTCC
Band lengths:
292-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]