MmuEX0025046 @ mm9
Exon Skipping
Gene
ENSMUSG00000001901 | Kcnh6
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6 [Source:MGI Symbol;Acc:MGI:2684139]
Coordinates
chr11:105875442-105878974:+
Coord C1 exon
chr11:105875442-105875603
Coord A exon
chr11:105875699-105875904
Coord C2 exon
chr11:105878549-105878974
Length
206 bp
Sequences
Splice sites
3' ss Seq
GACCCTGACCCTGGTTTCAGAGG
3' ss Score
6.81
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CCTCCAGCTTCCGCTGCCTGGTGGATGTGGTCCCTGTGAAGAACGAGGATGGGGCTGTCATCATGTTCATCCTCAATTTCGAGGACCTGGCCCAGCTCCTGGCCAAGAGCAGCAGCCGCAGCCTGACCCAACGTTTGTTGTCACACAGCTTCCTGGGCTCTG
Seq A exon
AGGGCTCTCACAGCAGGCCAAGCGGACAGGGGCCTGGTCCAGGCAGGGGCAAGTATGGAACTGTCAGCCAGATCCCGCAGTTCACGCTCAGCTTTGTGGAGTTCAACCTGGAGAAGCACCGCTCAGGCTCCACCACAGAGATTGAGATCATCGCTCCCCACAAGGTGGTGGAGCGGACACAGAATGTCACTGAAAAGGTCACGCAG
Seq C2 exon
GTCCTGTCCCTGGGTGCAGATGTGCTGCCAGAGTACAAGCTGCAGGCACCGCGCATTCACCGAGGTACCATTCTGCACTACAGCCCCTTCAAGGCTGTATGGGACTGGCTCATCTTGCTCTTAGTCATCTATACAGCGGTCTTCACGCCCTACTCTGCTGCCTTTCTGCTTAGCGACCAGGACGACTCACAGCGTGGTACCTGCGGCTATACCTGCAGCCCGCTCACCGTGGTGGACCTCATCGTGGATATCATGTTTGTGGTGGATATTGTCATCAACTTCCGAACCACCTACGTCAACACTAATGACGAGGTGGTCAGCCACCCCCGACGAATCGCCGTCCACTATTTCAAGGGCTGGTTCCTCATTGACATGGTGGCTGCCATCCCTTTTGACTTGCTTATCTTCCGCACTGGCTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001901-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.021 A=0.237 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=56.4)
A:
NO
C2:
PF0052026=Ion_trans=PU(31.0=45.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTCCCTGTGAAGAACGA
R:
GCAGAAAGGCAGCAGAGTAGG
Band lengths:
306-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types