RnoEX0046046 @ rn6
Exon Skipping
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94213264-94217231:+
Coord C1 exon
chr10:94213264-94213425
Coord A exon
chr10:94213549-94213754
Coord C2 exon
chr10:94216806-94217231
Length
206 bp
Sequences
Splice sites
3' ss Seq
AATCTTGACCCTGGTTTCAGAGG
3' ss Score
5.1
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
CCTCCAGCTTCCGCTGCCTGGTGGATGTGGTCCCCGTGAAGAATGAGGACGGGGCAGTCATCATGTTTATCCTCAATTTCGAGGACCTGGCCCAGCTTCTGGCCAAGAGCAGCAGCCGCAGCCTGACCCAACGGTTGTTGTCACACAGCTTCCTGGGTTCTG
Seq A exon
AGGGCTCTCACAGCAGGCCGAGTGGACAGGGGCCTGGCCCAGGCAGGGGCAAATACAGAACCGTCAGCCAGATTCCGCAGTTCACACTCAACTTCGTGGAGTTCAACCTGGAGAAGCACCGCTCAGGCTCCACCACGGAGATTGAGATCATCGCTCCGCACAAGGTGGTGGAGCGGACACAGAATGTCACTGAAAAAGTCACCCAG
Seq C2 exon
GTCCTGTCCCTAGGTGCAGATGTGCTGCCAGAGTACAAGCTACAAGCACCGCGTATCCACCGAGGCACCATTCTGCACTACAGCCCCTTCAAGGCCGTGTGGGACTGGCTCATCTTGCTCTTAGTCATCTATACAGCGGTCTTCACGCCCTACTCTGCCGCCTTTCTACTCAGCGACCAGGACGAATCACAGCGCGGTACCTGTGGCTATACCTGCAGCCCGCTCACCGTGGTGGACCTCATCGTGGATATCATGTTTGTCGTGGACATCGTCATCAACTTCCGAACCACCTACGTCAACACTAATGATGAGGTGGTCAGCCACCCACGACGCATCGCTGTCCACTATTTCAAGGGCTGGTTCCTCATTGACATGGTGGCTGCCATCCCCTTTGACCTGCTTATCTTCCGCACTGGCTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.232 C2=0.000
Domain overlap (PFAM):
C1:
PF131881=PAS_8=PD(18.5=76.9),PF082777=PAN_3=PD(7.1=15.4)
A:
NO
C2:
PF0052026=Ion_trans=PU(31.0=45.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGGCAGTCATCATGTTT
R:
ATTCGTCCTGGTCGCTGAGTA
Band lengths:
302-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]