GgaEX7011997 @ galGal4
Exon Skipping
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:855371-856763:-
Coord C1 exon
chrLGE22C19W28_E50C23:856695-856763
Coord A exon
chrLGE22C19W28_E50C23:855973-856146
Coord C2 exon
chrLGE22C19W28_E50C23:855371-855508
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTTTCCCCATTGTTTTGCAGTTC
3' ss Score
8.63
5' ss Seq
ATGGTTGGT
5' ss Score
5.29
Exon sequences
Seq C1 exon
TTTATACCAATGCCTGTGCTGTACGGCGTCTTTCTCTACATGGGTGTATCGTCGCTCAGAGGAATTCAG
Seq A exon
TTCTTTGACCCCCTGAAGCTGTTTGGGATGCCGGCCAAGCACCAGCCTGACTTCATCTACCTGCGGCACGTGCCGCTGCGCAAAGTGCACCTCTTCACCCTGGTGCAGCTCACCTGCCTCGTGCTGCTCTGGGTCATCAAGGTGTCCCGTGCGGCCATCGTCTTCCCCATGATG
Seq C2 exon
GTTTTGGCTCTCGTTTTTGTTCGGAAAGTCCTGGATGTCTGCTTCTCGAAGCGAGAGCTCAGCTGGCTGGATGACCTCATGCCGGAAAGCAAGAAGAAGAAGTTGGACGATGCCAAAAATGAAGCCAAAGAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'24-32,'24-31,25-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.283
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.3=100)
A:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAATGCCTGTGCTGTACG
R:
TCTTCTTCTTTGGCTTCATTTTTGGC
Band lengths:
202-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]