MmuEX6056556 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100809295-100811674:+
Coord C1 exon
chr15:100809295-100809363
Coord A exon
chr15:100810594-100810767
Coord C2 exon
chr15:100811543-100811674
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATGCTAGTCCTTCCTTCCAGTTC
3' ss Score
6.44
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TTTATCCCGATGCCAGTGCTCTACGGAGTTTTCCTCTACATGGGAGTCTCTTCGCTACAAGGAATCCAG
Seq A exon
TTCTTCGACCGTCTGAAGCTTTTCGGGATGCCTGCAAAACACCAGCCAGACTTCATCTACCTGCGGCACGTGCCGCTGCGCAAGGTGCACCTGTTCACGCTAGTGCAGCTCACCTGCCTCGTCCTGCTCTGGGTCATCAAGGCATCGCCGGCCGCCATTGTTTTCCCAATGATG
Seq C2 exon
GTGCTGGCCTTGGTCTTCGTCAGGAAAGTCATGGATCTCTGCTTCTCCAAGCGTGAGCTAAGCTGGCTGGACGACCTCATGCCTGAGAGCAAAAAGAAGAAGCTGGACGATGCGAAGAAGAAGGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'46-60,'46-49,57-60=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.3=100)
A:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCCCGATGCCAGTGCTCT
R:
TCCTCCTCCTTCTTCTTCGCA
Band lengths:
199-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types