HsaEX6066568 @ hg19
Exon Skipping
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:11034]
Coordinates
chr12:51887488-51891646:+
Coord C1 exon
chr12:51887488-51887556
Coord A exon
chr12:51888729-51888902
Coord C2 exon
chr12:51890771-51891646
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGCCAGTTCCTTCCTTTCAGTTC
3' ss Score
8.7
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
TTTATTCCAATGCCAGTACTCTACGGAGTTTTCCTTTACATGGGAGTTTCTTCACTACAGGGAATTCAG
Seq A exon
TTCTTTGATCGTCTAAAGCTCTTTGGGATGCCCGCAAAGCACCAGCCAGATTTCATCTACCTGCGGCATGTGCCGCTGCGCAAAGTGCACCTCTTCACCCTCATCCAGTTGACCTGTCTCGTCCTGCTCTGGGTCATCAAGGCATCTCCAGCTGCCATTGTTTTCCCAATGATG
Seq C2 exon
GTTTTGGCCTTGGTCTTTGTCAGGAAAGTCATGGATCTCTGTTTCTCTAAGCGAGAGCTGAGCTGGCTAGATGATCTCATGCCTGAAAGCAAAAAGAAGAAGTTGGATGATGCCAAAAAGAAGGCCAAGGAGGAAGAGGTCATAGTCCTTGCACCAACTGTATACCTGGGGGCCTCAAATTACAGAACATAGGAAGGGTCATGTGAAAAGTCAGCATGTCTGGAATCCCGAGGGTTATATTTAGGAGCTGGGAAGATTACCCCCAAAGATGTTCTCAGCTAAGAATGGATTAGGGATTCTTGCTTCTGTCTGTTCTTAATTTTTGGGTTTGACAACCACTTATTTTTTCCTTTGTTTACAATCTACTCACCAGGCTCATACCTACAATGTGAACATACAGTATGCCCTTATTAGCAGATTCAATGGCTCACATTCTTTCAAAAGGTCTAATTTGACAAATACATAAGACCCATTATTTCCTAGAATGTTTGTAATATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438-'23-25,'23-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.060
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.3=100)
A:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATGCCAGTACTCTACGGA
R:
TTGAGGCCCCCAGGTATACAG
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)