GgaINT0000056 @ galGal3
Intron Retention
Description
NA
Coordinates
chrE64:2890-3342:-
Coord C1 exon
chrE64:3028-3342
Coord A exon
chrE64:2956-3027
Coord C2 exon
chrE64:2890-2955
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CATGGCGTGCATCCCTACAGCTC
3' ss Score
8.1
Exon sequences
Seq C1 exon
TCCCATTCCCGCTGCGCCTGGCTGGGGGCCCTGGGCGCTGTGCGGGGCGCGTGGAGCTGCTGCATGCCGGAAGCTGGGGCACGATCTGCGATGATGACTGGGGACTGCCGGACGCGGCGGTGGTCTGCAGGCAGCTGGGCTGTGGGACTGCGCTGGCTGCCCCATCAGGGGCCTGGTTCGGGGAAGGCTCCGGCCCCATTTGGCTCAACCACGTGCGGTGCAGCGGCGATGAGCAGCGCCTTGCCCAGTGCCGGCACCGGGGGTGGCACAACCATGTCTGCGCCCACGAGGAGGATGCCAGCGTTGTGTGCTCAG
Seq A exon
GTGGGCAGCAGGCATGGGGGTGAGGGAGGGGAGAAAAGAGGGAGCCCCCCATCATGGCGTGCATCCCTACAG
Seq C2 exon
CTCATCCCTTGCTGTCGCCTGGAACCACGGAGCCCACTGGCACTGCTGGCAGCACCCCAACGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013490:ENSGALT00000021976:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.565
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCGGGGAAGGCTCC
R:
GTGGTTCCAGGCGACAGC
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]