GgaINT0000837 @ galGal3
Intron Retention
Description
NA
Coordinates
chrE22C19W28_E50C23:840335-840738:-
Coord C1 exon
chrE22C19W28_E50C23:840638-840738
Coord A exon
chrE22C19W28_E50C23:840440-840637
Coord C2 exon
chrE22C19W28_E50C23:840335-840439
Length
198 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AATTGGTTCTGTGATTGCAGAAC
3' ss Score
4.59
Exon sequences
Seq C1 exon
GAGTCTCAGCAGATGATGGAAGCTGCTGCTGCAAACTCAGTCCAGCTGAGCCTGGGGAAGACGAGCTACGTGGGTGTCCCCAAGCAGAACAGCAAGGACAG
Seq A exon
GTAAAGCCCCACCATGAGCCAGGCATGGTGGGATGTGTTGGGGTTGGACTGGATGATCTTATAGGTCATTTCCAACCTTAATGCTCTATGATTCTATTAAGGGACATGGTGAGTGGGCTTGGTGGGGGTGGGTCAGTGGTTGGACTTGAAGATTCATGAGGTCTTTTCCAACTGTAATAATTGGTTCTGTGATTGCAG
Seq C2 exon
AACTGACCCTTCTGAGATCAACATCTCAGATGAAATGTCAAAGACAACTGTGTGGAAGGCTCTCACCATGAATGCAGAAAAACTCTGAATCCGAGGAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423:ENSGALT00000013720:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.345
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCAGCAGATGATGGAAGC
R:
TTTCCTCCTCGGATTCAGAGT
Band lengths:
202-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]