MmuINT0147267 @ mm9
Intron Retention
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100643538-100644976:+
Coord C1 exon
chr15:100643538-100643629
Coord A exon
chr15:100643630-100644880
Coord C2 exon
chr15:100644881-100644976
Length
1251 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TGCCTGAGCTTTGATTTCAGATG
3' ss Score
5.41
Exon sequences
Seq C1 exon
GAGGCCGAGAAGATGTTGGACATTGGGGGTGACAAGTTTCCCCTGGAAAGCAGGAAGCTGCTAAGTAGTCCTGGCAAGAGCAGCAGCTTCAG
Seq A exon
GTAAAGCGCCATGTACCAGCCAGCTTGCGCCAGGGTTCCTGCGAGAAACTGCCCTGCGGAGCAGTGCAGCCGGCCCCACCTCCATCCATCCATTCCACTGTGTAGGAACAAACGCCTGTGGCGTGCCCTGCTCTGAGAGCCTGGTCCCATGTCAGGGTGTACTGGAGGGGATGCCTTTGTCCCCGTCCACTTCCTCCTGTTGCAGTTAGCTGATACACCAGGGTCACAGCACTGCTAACACACGGCCAGGCTCCAGGTGGGATCTCTCCACTTCTCCACCCCAAGTTGTTGTTTTCCACTTTACTGAGTCCAAGAGTGTGAGAAGTGCATTTCCAGTAGTTTTCAGCTGGTGGGTTTGAGATGCCTGGACCCAGGCCTGCCTCTGGGAACAGGCAGGAGGTCTCTCCCGTGTGGGTTACAGCATTTTAATTCAGGGAGCCAAGGAGAGGCTGACCTCGAAGCCCAGGCAGTCCTCGTTCTTTACCAAGGCTGTTGCTCACCACAAAGCACAGGGTCTGAGAGCCCTGTATGTGGTTCAGCCCTGACCTCGATGTCTGCTGGGAGGCTGCACACCCAGGCTGAAGAAGCCCAGAGGTGAGGAGAGCTAAAGAGTGGAGCCTAGCGGGTCACAGGGAGTTAGCTGATGAGTTATGAGACTCAATGTAGTTTATACCATGGATAAATCAGGCAATCTTTTCTGTGGTCTCTGAGGAGGTGTCCGTGGGCTGTGAGGAACCTTTGAAGTCTCTGGCAGTGAAGCAGGATCGGCTCCTTTTCCTGTGGGTGCAGGAGTCTCTCTGCATTTCAGGAGACCGTTTTCTGGGACCAAGGATCCTGGTTGGAGTCCCGACACTGCCACTGTTTGAGTCTTGATGGGCACTCAGCCCTGAAGACTTCGGGCTTAGCACCTTCAAAATGAGGATTATGAGCGATCTCTTTTGCTATGAGTGCTAAGCTAATAGACCATGAAATTCTTTTGTAAACTATAAATGGGAGAGATTCAGTTATGTAAACGTGGATGTAAAAGAGCGCCCTCCACATAGCAGCACTGGTGCCAGCATCCCTGGGAAGCTCGCCATGACCTGGGGCATCGGCCAGCCTACAGCCTTAGCGCTGCTCAAAGGCTGCCTTGCCTCTTCAGAGCTGGACCCCTCCATCCTCTGGCCTCTCTCCCTTCTGGTGGGGTGGTGTCAGGGCTGTGCCTGCCCTCCCTTCTGTGTTTGAAGTTCACTGCCTGAGCTTTGATTTCAG
Seq C2 exon
ATGTGACCCTTCTGAGATTAATATATCAGATGAAATGCCTAAAACCACGGTCTGGAAGGCTCTCAGCATAAATTCCGGAAATACAAAAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-Slc4a8:NM_021530:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCGAGAAGATGTTGGAC
R:
TCTTTTGTATTTCCGGAATTTATGCT
Band lengths:
182-1433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: