GgaINT1025752 @ galGal4
Intron Retention
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:854534-854944:-
Coord C1 exon
chrLGE22C19W28_E50C23:854844-854944
Coord A exon
chrLGE22C19W28_E50C23:854646-854843
Coord C2 exon
chrLGE22C19W28_E50C23:854534-854645
Length
198 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AATTGGTTCTGTGATTGCAGAAC
3' ss Score
4.59
Exon sequences
Seq C1 exon
GAGTCTCAGCAGATGATGGAAGCTGCTGCTGCAAACTCAGTCCAGCTGAGCCTGGGGAAGACGAGCTACGTGGGTGTCCCCAAGCAGAACAGCAAGGACAG
Seq A exon
GTAAAGCCCCACCATGAGCCAGGCATGGTGGGATGTGTTGGGGTTGGACTGGATGATCTTATAGGTCATCTCCAACCTTAATGCTCTATGATTCTATTAAGGGACATGGTGAGTGGGCTTGGTGGGGGTGGGTCAGTGGTTGGACTTGAAGATTCATGAGGTCTTTTCCAACTGTAATAATTGGTTCTGTGATTGCAG
Seq C2 exon
AACTGACCCTTCTGAGATCAACATCTCAGATGAAATGTCAAAGACAACTGTGTGGAAGGCTCTCACCATGAATGCAGAAAAACTCTGAATCCGAGGAGGAAAAAGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423:ENSGALT00000013720:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=NA C2=0.345
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTCAGCAGATGATGGAAGC
R:
TTACCTTTTTCCTCCTCGGATTCA
Band lengths:
210-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]