GgaINT0001286 @ galGal3
Intron Retention
Gene
ENSGALG00000004866 | CELA1
Description
NA
Coordinates
chrUn_random:937613-937992:+
Coord C1 exon
chrUn_random:937613-937758
Coord A exon
chrUn_random:937759-937842
Coord C2 exon
chrUn_random:937843-937992
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGATGGGTGTTCCTCCATAGGGT
3' ss Score
9.27
Exon sequences
Seq C1 exon
CCAACGGGCAGCTGTCGAGCGTGCTGCTGCAGGCATACCTGCCCGTCGTGAGCTACAGCACCTGCTCCAGCTACTCCTACTGGGGCTCCACTGTTAAGGACACCATGATCTGCGCTGGTGGGGATGGTGTGCGCTCCGGCTGCCAG
Seq A exon
GTACAGCCCTGTCACCCCACCGTCACCCACTGTCCCCCCCCCCAGCCCTGTTACGGCCCCACTGTGATGGGTGTTCCTCCATAG
Seq C2 exon
GGTGATTCGGGAGGCCCCCTGCACTGCGCTGTCAATGGGGTGTACCAAGTGCATGGCGTCACCAGCTTCGTCTCCAGCTTGGGCTGCAACGTGCGCAACAAGCCCACCGTCTTCACCCGCGTCTCTGCCTACATCTCCTGGATATCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004866:ENSGALT00000007770:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100),PF0263810=DUF187=PD(29.4=75.5)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTCCAGCTACTCCTAC
R:
CAAGCTGGAGACGAAGCTGG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]