BtaINT0036093 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008900 | CELA1
Description
Bos taurus chymotrypsin-like elastase family, member 1 (CELA1), mRNA. [Source:RefSeq mRNA;Acc:NM_174048]
Coordinates
chr5:28627727-28636104:+
Coord C1 exon
chr5:28627727-28627872
Coord A exon
chr5:28627873-28635954
Coord C2 exon
chr5:28635955-28636104
Length
8082 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
TCTGCTTCTCTTCCCCACAGGGT
3' ss Score
13.23
Exon sequences
Seq C1 exon
CCAATGGGCAGCTGGCCCAGACCCTGCAGCAGGCTTACCTGCCCTCCGTGGACTACGCCACCTGCTCCAGCTCCTCCTACTGGGGCTCCACTGTGAAGACCACCATGGTGTGCGCTGGAGGAGACGGAGTTCGTGCTGGATGCCAG
Seq A exon
GTGAACACAGGCTCAGAGTGTCAGAAGTCTCACCCCAGCTCCCTCTCCTCTCTGCCTCTCACCCCCTACCTTTTCCTCACCTCCTATTCCACACCTACTCCCACCCATATATAGAGACTCAACTTTCTAGTCTAGTGTCTGGATGAGAATTATTCTGTGCTGGTAAGTCTGTATTCCAGGAATCTCAAAGTTGAAAGGAACCTTAAAATTCATCTTGCCTGCCTGATGCCCCCACCTCAAAAGTTTGCATGTGGCCTAACATTTGTGTTGGTATATGTGAGTGTTCTTTAGAAGTTATTTGTGCCTTAGATTTTTAATGGCTGCAGTAGGGCTAGGCCTGGATTGGTGGTTGTGACTGTGTATAAGGTAGCTTCCCTCCCATCAACCCCAATTTTTCTTTCTTTCTTTTTTTTTTAATATTCTGTTTATTTATTTGACTGAACCAGGTCTTAGTTGTAACACGTGAGATCTTCTGTCTGGGATCTTTAGTTGTGGCATGTGAACTCCCAGTTGCAGTATGTGGGATCTAGTTCCCTGACCAGGGATCAAACCCAGGCCCCCTATATTGGGAGTGCAGAGTCTTAGCCATTGGACCACCAGGGAAGTCCCCTAATTTTTCTTATAGCTCCTCTACCACCACCCTTTTGACCCAGTAGTATTGATAGCAATATATATACAGGTGAATACGGTAGGGGAAAGTACACTAAATAGCTTTATAATAGAATATATATAAACTATTATAAAATTATATATATGTATGAATCATCTTCTATTTACACAAGATCAATCAGCAATACACCATCTTACAGATTTGGTACTGCAGTCCAATAAAAGTTCTTGATTATCTGCTAAATGCTAGGCACTGTGTTTGATTCATCTGTATCAAAAATACTAAAGATACAAAGATGAATATAAACACAATCTAGTGGAGGAATGGAGAGACATAGGACAGAACGTCTACAGTGTGGCTAAGTGTTATAATAAAGACATGCCTAAAGGTGATACAGGAATCCAAAAACCAGATACTCCCCTCTCTACCTTTTGGTGTCAGAAAAGACTTGCCTTCCCCGAGAAGCTAGAGTTCGTAGTGAGTCATGAAGGTTAAACAGAAAGCCAGGCAAGAAAAAAGAGGAAAAAATATTCAGAGAGAGAGAACCTGAAGAGAGACATAGGCTAAGAACCTAGAACACACAGAATTATAAGGCATTCCCTAGAGCTAGAGCAGCGGTCAGGGCTCACAGTCTCCAGCATCCAACTTGCTGCCTCTGTTTTTTGTGTGGCCCGTGAGCTAAGAATGTTTTTTATATTTTTTTTTAATGGTTGGGAAAAAATTTAAAAAGGAAGAATATGTTATGACACATGAAAAATATAAAATTTCAATGTTTGTTTTAAAAAGAAGGTTTCCTTGGAATGCAGTTATACTTGTTCATGACATTGTTTATGGCTGCATTCATGGGGTTGAACAGTTGGGAGAGAGACTGTAGGACCTGCAAAGCCTGAGATACTTACTTTTTGGCTCTTTACAAAAAAAATGTGCTGACCTCTGGGCTACAACTTAAACTATTACCATTCTAGGGAATGTCAGGAGATGACCTTAGAGACAGGTAGGAGCCACAGGACTTGGAAAGTGAAAGAAAGTGAAAGTGAAGTCACTCAGTTGTGTCCAACTCTGCGACCCCATGGACTGTAGCCTACCACGCTCCTCTGTCCATGGGATTTTCCAGGCAATAGTACTGGAGTGGATTGCCATTTCCTTCTCCAGGGGGTCTTCCCAACCCCAGGGATTGAACCCAGGTCTCCTGCACTGTAGACAGACGCTTTACCGTCTGAGCCACCAGGGAAGTCCACAGGACTTGGGCCTTCATTCAAATAGCATGCTTGGGACATGCACTTTATCTTAGACACTGGGAAACCCTTCAAGAGTTTTAAACAAGAGAACAGCGTGAGCAGATTTGCCTTTTAAAAGCACTCTCTGATGACAAGGTAAGCATGTATTTGAAGAGGGAAAAATTAGCAGGGAGACTGCTTAGGAGACTGTTTCAATTATCTAGGCAAGAAATCTGAGGGTCCAAGTTAGCGCAGTGGAAAGGAGGGAGGTGGAGGATCAGGAGTGACTTCCAGGCATCTCAGTTAAGTGATTTGGGGGAGGGGTTTGCAGCGTCCAATGAGACAAGATTTCTAGGATTTGGGAGGGAAAGTGATGAATATGGTTCTGGACAAATTGAGTCTGAGATCTCAGTGGGACATTCAGCTATAGTTTAACTGGTAAGAAACCAGATATAAAGAAAGTAGAGCCTGGAAGAGAAAACTGGGCTAGAGATAAGCTCAACAGGAAATGAGATTCCTCAAACTCTCCCACCCTCTACTCCCCACTTCCCTCAGGGAAAAGTGGTAGAATGAGGGAAAAAAAAAATAAAACAGTGAGTTGGGGAAGAACTGTGATAACAGGAATATTTGAGTGCTTCAGGGCTAGGTGGAGGACAAAGGATCCGTAAGGATCTAAGAAGTAAGAGAAAACCATAGTAATAAGAGGTTTACAAACTCTCAGGAAATACTGACAGGTCATCACATAGCCTACAGTGAAGCCAGGAGCCACAGAGCATAACTGAAAGTAGCTTCTTTGGCAGTTGACAGATCACTGGTAACTACAGCCAGAACAGTTTCAGTGGAGTGATGAGGACGGAAGCTTGATTGAAAGGTAAGGCATGAAGAGGCACTAAGAAATAGCAAGAAACATAGAATACTCTTTCAAGAATCTTGGATGAAAGAGGAATTTAAAAGTCTGGTGGCTTTCAGGAGGATGAAAGTCATGGAGCGGGTGCATCTTTTAAGATTGAAGAAAATTGAGTGTATTTCTGGGCAGAGAGGAAAGGATCCTGTAGAGTCAGAGAGAGGGAATAAATGGATGATGCAAGACCCCAGGGGCTCCCCCAGGGGTAGCTCAGCTGATAAAGAATCTGCCTACAATGCAGGAGACAGGGATTCGATCCCTGGGCTGGGAAGATACCCTGGAGGAGGGCATGGCAACCCACTCTAGTATTCTTGTCTAGAGAATCCCCATGGACAGAGGAGCCTGGAGGGCTACAGTCCATGGAGTTGCAAAGAGTCGGACATGACTGAGCGACTAAGCACAGCACAGCACAGCAAGATCCCAGAGGGGAAGGAAGAGATGAACCAAGAACACAGGTGGAGCTGGCTTTGAATAGAAGAGGGACACAGAAACATGCGTGGATATGAAATAATGTGCAGGCTGAGTAGCTGAAATTTGGTGGGTGTTCTGTAATTGCTTCTATTTATTCATGAACTAGGAGTCAAATGTGGAAAAATGAAGGGGTAAAAGGGTTGGATGGATTTGGATTAAGATGAATGGAGAAAGACTGGCCTCCATGATGTTGCTGACAGGCTGAGGTTAGAGACCATGCAATAATCATATGGGTAAATTATTCACTCCATTCAAGGATCTAGTTGTAGGCAATGGATTAGTTCAGGGCTGGGTTTTCATGCATTATTGAAACATAAAAGTATTTCAGATCAAATGCAAGCTCTAAGCTGGGTGGAGGAGGAAGAGAAGCCAGAAGGAGACTGGTAGGCTGGCTGAAATAGTAGAATCAAAAATTAAAGGTTTTTTTGGTGAGCACTTAGTACTATGAAAGTAAGGTGACCAACTCATCCCAGTTTTCCCAGGACTTCCCCAAGGTCAGCTGAAAAAAAGCCCGAAACTACACAACTTACAAGTTAAGAGTTTTGTTTTGGTCGATGAACCTACTGAGGACTATAGCCTGGAAGACACCCTTTCAGACAGCTCAGAGGAACAGTTTCAAAGAGGTAAGGAAGGAGCCAGGGGATGTTAGAATTTTTGCTGGGGGGAAAAAAAAAAACAACAGTTAGCCATCAAAGATTACTGCTAATAACAAGAAACAGACATCTCAAGTGAATGGTTTCAGTGCTTTTCCCTGTCTGGGAAGATGCAAGAGTCTGGGCTCACAGAAACCAGCCCTTTGATATTCATTGTAACTATCTAGGGTCAGTATCATTTTTCTCCATCTTGAAATCCCTTCAGGATGTGGAGAGCGGCTGCAGGGGCAGGTGGTTTGATAGTGGGCAACATTCATTGTTTCCCAGAATAGCAGGCAACACTTCATTTACTGACACAGCAGGCAACATTTTTTTTTGTCCACATCTAAAAGTCCTGTATCCTGGGAAACCTACCTGCAAGTTAGGGTAAAAAAAAGATGTGGGACTTCCCTGGTGGTTTAGTGGCTAAGGCTCAGCGCTGTGAATACAGGGGGCTCTGGGTTCGATCCTTGGTCAGAGAATTAGATTCCACATGTCACAACTAAGACCCAGTGCAGCCAAATGAATAAATAAATCAATGAAGACAAACACATAAGTCAAATTCTTCCAGTTCCTCACCAGCCAGCCTCACCAATAACCTCTTAAGGTTTAACCTTTCTGAGTTTAATTCACTTTCCCCTGTTTGCTCTCAAAGTCTTGAACTCTGAAAAACTAGAGTACTTTCCTTCTGGCTGACACTGCAAATCAGTCTCTGAGGCCGTTGTGTCTCCACAGTCTCTTCCCACTGGAACTTCCCAAATATTGTGTCTTGGTTTTGGGGCTTTCAGATTTCTGTGTCCCCAGCCAATCTCCTCAGAGGGGATTCACTAAACGCCTCTCACGGCAATCCAACCACTCCCATTGAGCTCTCTCCCAGCTCTTCCTTCTGCCCTAAAATCCTCAGCCATATCCTCCTTCACTACAGAGCTTTTGTTTCTTTTCAGGTCAATTAGCATAAGACAGTAATACGGTACACAATTCAATTACCTTCCATTCCTCTAGTTTAGAAATACTCTCAAATCCCTATAAGAATTTAGGTGGAAGATATTTAAACTGTTTTGTATTGAGTACAATAACCTAAAGGAATATACATCTTTCTTTTTATAAAAAGAATAACCATCTTCTTTTCCCAAACATAGTGAGGGTGGGGTACAGCTACTTCCTTAGAAAAAAAAATTAGCCCCAATTTGAACTTTTGGTCTCTTTCCCTAGTTCTTCTTTTTTTTTTTTTTTTTCCATTGAATGATTACCTTGTTTAAGGTGGCAAATAAAACTCTGAGGCTTGATAGTGGGAAAGAACAGTCATGTGTTTCTTCTACAAGTTCTCCCTCCCTAGAGGGGACTACTTTTAACTCTTGAGTTGATTTCTTTTATGTCTACCTCCAGCTCTCTAAAAGCATATACTTATATTGCTACTTAATTTTTCACTTCAGGCATAATGCAAGATATGGAACTTCTCTTCCTTTACACATTTATACTTGCCCTTCAAGCATGAATTTTTCTGATCCCCACCCCAAGATCCCTAAATAATTTCAGTTAAATTAACATTTAGTATTTATTATAATTATGTAAAATGCTATTCCCTGAATAATTTTGTTTTCCCTAGAGTTAATAATTGTCTTTTAAAATTTGCATAATATATACTCATGGCAAATAGATGGGGAGAAAATGGAAACTGGCAGTTTTTATTTTCTTGTGCTTAAAAATCACTGTAGACGGTAACTGCAGCCATGAAATCAAAAGACGCTTGCTCCTTGGAAGAAAAGCTCTGACAAACCTAGATGGCATATTAAAAAGCAGAGGCATTACTTTGCTGACAAAGGTCCATATTGTCAAAGCTGTGGCTTTTGCCGTAGTCACACAGATGTGAAAATTGGACAATAAAGAAGGCTGAGCACCAAAGAAATGATGCTTTTGAATTGTGGTGCTGGAGAAGACTTGAGAGTCCCTTGGACAGCAAAGAGATCAAACCAGTCAGTCCTAAAGGAAACCAACCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAACTCCTATACTCTGGCCACCTGATGAGAAGAGCTGACTCAATGGAAAAGACCCTGATGCTGGGAAAGACTGAGGGCAGAAGGAGAAGGAGACGACAGAGGATGAGATGGTTGGATGGCATCACTAACTCAATTGACATGAGTTTGAGCAAACTTTGGGAGATAGTGAAGGACAGGGAAGTCTGGAGTGCTGCAGTCCATGGGGTCACAAAGAGTTGGATGAGACTTATTGACCAAACAACAACTAACAACATACTCAACTCATCACCAGTTCAGCCTTAAACTCTCCACTAATTTATAACTGACCTATTTTATCTTCTCTTGACCTAGTGTTCTGTGTCTTGGTATGGGTCTATTTGCATTCATTTTGAGGGATAGTTAGTGAGTTTTTTCATCCTGGAAACTCCAGACCTTTGGTTCTGAAAATGTTTATTTATTGATGATTTCCTCCCCTCCGTTTTCATTTTTTGTTTCTAGAATTCCTGTTACTCACAATCCACCTCCTAAACTGGGTCTCCTATTTTCTTATTTTCTCTCTATATAGTTTGTCTACTTTATCTCCTAGCCTAATATTTCATTTCTACTATCATATTCATGTTTCCAAAGGCTTTTTGTTTTCTGAATGCTCTAATAGCTTGCTCTTCTTATATCATGGATATAATACTTATACAGTTTTATTGTTTATAGTCTTCTCCCTGCATAATCTTGGTTGTCTTCATTTTTTGTTTATTTCTTTCTCTTTATTTTGATCTTTATTTTTTAAATTTTAAAAAAAAATTTTATTGGAGTATAGGTAATATACAATGTTGTGTGAGTTTTAAGTATACACAAAGTAGAATCAGTTATACATATATTCACTTTTTTTTTCATTCTTTTCCCACATGGGCCATTACAGAATATTGAGTAGAAGTTCCCTGTGCTGTACAGTAGGTTCTTATTAATTACCTGTTTTACATATAGTACTGTATACACGTCAATCCCAATCTCCCTATTTTTCCCTCCCCGCCCATTTCTCTCTCCCCTGATAATCATAAGTTTGTTTTCTACATCTGTGACTCTACTTCTGTTTTAGATTCCACATATAAGTGATATCATATGATATTTGTCTTTCTGTGTCTGACTTACTTCACTCAGGATCTTTATTTTTATATTGAGGCTTTCTTCCCTGGTGACTCAGATGGTAAAGAGTCTGCCTGCAAGGCAGGAGACCCGGGTTCAATGCCTGGGTCGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGAAGAATCTCATGAACAGAGGAGCCTGGAGGGCTACAGTCCATGGGGTCGCAAAGAGTCAGACACGACTGAGCAACTAACACTTTCTTCAGATGTTTGGTCATCCCTGACCATCTGCTCTTATTTCAGAGTAGGACAGTGGCAAGCTGATAGGTACCTCTGGGCCATAGATGGGGTTCATCTATAGGGAACTGCTTTGTCAGGTGATCTGGCTAGGCCGTTTCATTGGAGGACTTCTAATGATAGTACCTCAAAGTCTTCCCTCTTGTGCTGGTCAGATTCTTCAATGAAATAGCTTCCAATTTTACGTCTAGAATCACAGAACTGACATCTGGGAACTGAGTAAGAAAAAGAGTATCAAGGTCATAATCTGTAAACTCAGATTCTTCTGATTCTGAGCCCAAACAAGTAACCACTACCCAATACATCACTTTCTCTTCTCCTTACCTCAGTTTAGCTTAACATGTTTTGACTACCTACCCTGTTATCTAAATGCTGTCCAATTAGACCCATTGGTCTGAATGCTGGGGGTAGATAAATCATTAGAACACCCTATTTCCCCCACCGTAGGTTCAATTTAAGTCAGTAATAGCTATTGAACTTAAGACATTCAAAGTTCTAGGCTAGCATTGTAGAGTGGAAAATATCAGCAAGATGTAGTTCCTGTCTCAAGAAGCTCACAGATAAGCGTGGGAGTTAGAAACAAATTATGAAACCAAAACACAAGGCAGAACATGACATATGGGCTGCAGAAGAAAGGAAGAAGTACTATAATTGTTTAGAAAGTGGGGATGCGAAGGAAGTAGGGATTTCAACTGGAGCTTTTATACAGTACGGGATTTATAAACAGAGATGTGGGTGGATAGGGTGTAAGCAGAAACAAAGGCCCAAAGATCCAAAGATCTGGAGTTTTAGGACTCTGCTTCTCTTCCCCACAG
Seq C2 exon
GGTGATTCTGGAGGCCCCCTTCACTGCTTGGTGAATGGCCAGTATGCTGTCCACGGTGTGACCAGCTTTGTATCCAGCCTGGGCTGTAATGTCTCCAAGAAGCCCACAGTCTTCACCCGGGTCTCTGCTTACATCTCTTGGATAAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008900:ENSBTAT00000011718:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]