HsaINT0033069 @ hg19
Intron Retention
Gene
ENSG00000139610 | CELA1
Description
chymotrypsin-like elastase family, member 1 [Source:HGNC Symbol;Acc:3308]
Coordinates
chr12:51723468-51733789:-
Coord C1 exon
chr12:51733644-51733789
Coord A exon
chr12:51723618-51733643
Coord C2 exon
chr12:51723468-51723617
Length
10026 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
TCTGTTTCTCCTCCCTGCAGGGT
3' ss Score
13.31
Exon sequences
Seq C1 exon
CCAATGGGCAGCTGGCCCAGACCCTGCAGCAGGCTTACCTGCCCTCTGTGGACTACGCCATCTGCTCCAGCTCCTCCTACTGGGGCTCCACTGTGAAGAACACCATGGTGTGTGCTGGTGGAGATGGAGTTCGCTCTGGATGCCAG
Seq A exon
GTGAACATTTGCAGGGGGTCCCACCCCAGGTCCCGCCACTCTCTGCCTATCCCTCCACCCCTCTTCCTCACCTCCCTATTCGACACTTACTCTTAGTCCTACACAGACTCAATTTTCTACTCTGGCGTCTAAGTGAGAATGATCCTGTGCTGGTAATTCTACACATGCAGAAACTCAAAGTTGAAAGGAACCTTAAAATTGATCTTGCTCGATGCCCTCACTTCAAAGTTTGTACGTGGCCCAACATTTATATGTTGTTGTTGGTATATGTGTGTGTTCTTAGAATTTGTTACCTAGATTTTTTTTTTGAGATGGAGTTTTGCTCTTGTTGCCCAGACTGGAGTGCAATGGGACGATCTCGGCTCACTGCAACCTCCGCCTCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGCTCAGGCTGATCTCGAACTCCCGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGACTACAGGCGTGAGCCACCATGCCCAGCCAAATTTGTTACCTAGATTTTTTAATGGCAGCGATGCAGCTGAGCCTGGACAGGTGGTTGTGATGCTGTATAAGCAGTACCCTGCTCCCTCTTACCTATCAGTCCTACTTCTCTTGCAGTTCCTCTACCACCATCCCTTTACCCCAGTGATATTTCTGGCAGTATGTACAGGTGAGTTTGATAGGGGAAAGTGCACAAAATAATTTTATAATAGCTTATATATAACAAATATAACCTTCCTCTATTTTGACAAGATCAATCAGCCATAAACTATCTTACAGATTTCTCTTTTTAAGCTTTTTTTATTATTATTATTTTAATATAGAGATGGGGTCTTGCTTTGTGGCCCAGGCTGGTCTCAGACTCCAGGGCTCAAGTGATCCTCCCACATTGGCCTCCCAAAGTGCTGGGAATACAGGCGTGAGCCACCATGCCCCACCCCAGATTTCTTAATGCAGTTTAACAACTATTCATTATATATCTACTATATGCCAGGCATTGTGCTAAGTGCTAAGGTTACAAAGATGGATCAAACAGTGTCAAGTAAAGAAACCAGAGGCACAGACATACAATAGAACATTGTAATACAATGTGGTTAAGTGTTAATAATCAGGATGTGCACAGGTGATATGGAAGCCCAAGGGTAGGTACCTACCTCTACCTACTGGGGCCAGAAAAGACTTTCCTTCCCCAAGAAACTAGAATTTGTAGTGGGTCCTGAGGGGCAAATAGGAATAGGCCAGGCAAAAAGGAGAAAAGACATTCAGAGGGAGGGAACGGCATGAATAAAGGCAGGGGGCCAAGAAACAACCTAGAGTACATACAGAATTATGGGGCATTCCCTAAGGCTAGAGTAGAGCAGCGGCTGGAGGTCCACAAGCCGAATCTAGCTCACTGCTTGTTTTATATGGCCCATGAGCTTAGAACAGTTATTACATTTTGATTTCTATATATATATATATATATGTATGCGTATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTTTTTTTTTTCCTGAGATGGAGTCTCACTCTGTCGCCCAGACTGGAGTGCAGTGGCGCAATCTCAGCTCACTGAAACCTCTGCCTCCCGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCACCACCACATCTGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTCACCATGTTTGCAAGGCTGGTCTCGAACTGGCTGGTCTCGGACTCCTGACCTCGTGATCCACCTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCATATACATATATATATATATTTGTTTTTTTTTTGAGACAGCGTCTCACTCTGTTGCCCAGGCTGGAGTTCAGTTGTACCATCATGGTTCACTTGTAACCTCTGCCTCCCAGGCTCAAGTGATTTTCCCACCTCAGCCTCCCTAGTAGCTGGGACTACAGGCACATACCACCATACCCAGCTAATTTTTTGTATTTTTTGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTGGAATTATTACATTTATTAATGGTAAGGAAAAAAAATCAGAATAATAATATGTCATGACACATGAAGAATATATAAAATTTCAGTGCCCATAAATAACATTTCACTGGAACACAGTCACAGTTGCTCATTTACAAACTGTTTATGGCTGCTTTTTTTTTTTTTTTTTTTTTTTGAAGAGATAAGGTCTTGCTCTGTCACTCAGGCTGGAGTGCAGTGGTGCCATCTTGGCTCACTGCAGCCTCAACTTCCTGGGCTCAAATGATCCTCCCACCTCAGCCTCCCAAGTAGCTAGGATCACAGGCACATGCCATCACACCCAGCTAATTTTGTTTTGTTTTTGGTAGTGACAAGGTTTCACTATGATGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGCAATCCTCCTGCCTTGGCCTCCTGGAGTGCTGGGATTATAGGCGTGAGGCACCATGCCCAGCCTATGGCTGCTTTTGTAGTACAACACAAAGTAGTTGCAATCAAGACGGTATGGCCTGCAAAGCCTGAAATATGTACTGTTTGGCCCTTAACAGAAGAGGTTTGCTGACCCGTGGGCTAGAATAGAAGCTACCACCATACTAGGAAATGTCAGGAGGTAAGACTAGAGAGGCAAGCAAGAGCTGTACAACTCAGGGCTTCAAATGCCAGGCTTGGGGACATGAACCTTATCTCTTGGGCATTGGGAAGCCATCAAAGACTTCTAAACAGGAGACTAGCACAACCAGATTCACCTTTTAGAATTGTTCTTTAGGCATGTTTTTGAAGAAGACAAGAGAGGCAGGGAGATTGCCTAGAGGGCTATTGCAATGATCTAAGCAAGAAATTTGAGGGCCTGAATTAAGGCAGTGGTGATAGGAACCGGAGGAGGGAAGGAGGAGGATCTGGAACAACAGCCAAGCATCTGGTTTAAGTGATTTGGGGGAGGGCACTGTTGCCCTGAGACAAGATTTACAGAGTTTGAGAGAGAAGATGATGAGTTTGGTTCTGGACAACCTTTGTCTGAGATCCCAGTGGGACATTCAGGTATAGCAACCAGTAAGAAATTTGGTGTTTTTTTTGTTTTGTTTGAGACGGAGTCTCCCTCTCTCACCCAGGCTGGAGTGCAGTAGCGCGATCTCAGCTCACTGCCCCCTCTGTCTCACGGGCTCAAGTGATTCTACTACCTCAGGTTCCTAAGTAGCCGGGATTACAGGCATGTGCCACAACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCCCCATGTTGGCCAGGCTAAGTCTCGAACTCCTGACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCTGGCCAAGAAATTAGATAGAAAAAGTGGGGCCTGGGGGAAGAGCTGGGCTAGAGATACCTACTGAGAACAAATCAGATCCCATTCCAGGGAAAAACTGTTCAATGAGAAAAGAGCAGTGGGTTGGGAAAGAACTGTCAGAACATAAATACTTGAGTGTTTCAGGGATAAGTGGAGGATAAAGAAACCACTAGGATCTAAGAAAGGAGAAGTAGATGTAAGATAAAAACCTGGTAATAAGGATATTATGAAATCTCAGGAAGTACTTACAGATATCACATAATATACAATTCACCCAGAAGCCACAGTAGGTAAGAGCTGAAAGTGGCCACTTTGGCAATTGTAACCTTGGCAAGAGCAGTTTCAGTGGAGTGGTGAGGGCAGAAGCTTGTCCGAAGGGTAAGAAATAAAGAGGCAATAAGACATATAACCAGCCGGGTGTAGTAGCTCATGCCTGTAATCCCAAGATTTTGGCAGATTGAGGCAGGAGGATCGCTTGAGCCCAGGAGTTAGAGACCAGCCTGGGAAATGTAGGGAGACTTCATCTCTATGAAAATTTTAAAAATTAGCTGGATGTGGTGGCGTGCACCTGTAACCCCAGCTACTTGGAAGGCTGAGGTGGGAAGATCACTTGAGCCAAGGAGTTCGAGGCTGCAGTGAGCTATGATCGCACCACGGCACTCCGGCCTGGGCAACAGAGTGAGACCCTGTCTCAAAAGAGGACAAAAAAAAAAAAAAAGGAAGAACAAAAAAAGTCTGGTAGCTTTAAGGACAGCAAGTCATGGAGGGAGTGGATCTTCTAAGAGAAGAAAATTGGCCGGGCGCGGTGGCTCCCGCCTGTAATATCAGTGCTTTGGGAGGCTATGGCGGGCAGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAGCATGGTGAAACACCATCTACTAAAAATACAAAAAAGTAGCCAGGCATGGTGGCGCGTGCCTGTAATCCTAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTCGAACCTAGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCACCACCGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAGAGAAAAGAAAATTGAGTGCATAAATAGGCAGAGAGGAAAGAATCCTGTAGAGTCAGACAGAGGTAATAATAATAATGGATGGCACAAGATCCCACAGAAGAAAGAGATGGAACTAAGAGCACAGGTGGAGCTGGCTCTGAACAGGAAGAGGGATACCAGATGTGCACACAGACATAGAAAAGTTTGCTGGATTTGGTAGCCGAACGTTGGCAGGTGTTCTACATTATTGCTTCTAGTTACTCATGAACTAGGAGGAGTCAACTTGACTGCTGAAAATGAAGGGGAAAGGGTTGTATGGGTCTGGACTAGTTAGTGTGAATGGGAGGACAGTCCTCCAAGATGTTGCTGACTGGCTGTTTGGAGACCAGACTACGACCACATGGATATATGATTCACTCTGTTTTACTCAAAGACGGTTTCCTGCATGATTGGGGTAAAAGGACAGGATTGCAGATCAACTGCAAGGTCCAAACTAGATGGAGGAGAGAGAGAAGCTGGCAGGCTGGCTGAAACTATAAAAAATGAAAGGATTAGGCCAGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGAAGGAGAATGGTGTGAACCGGGGAGGTGGAGCTTGCAGTGAGCTGAAATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAGAAAAAAAAAAGGATTAAAAAGTTTTTTGTGTGTATGAGTACAAAGAACCATGGAAATAAAGTAGCCAATTCATCCTAGTTTGCCCTAGACTTTCCTGGTATTAACATTTAAAAGTCCTGTATCCCAGGGACTCTACATGGGAATAAGGGGGAAAATAGACTAATGCATAATGCAACCTCTTCTAGGCCTTCATCAGCCAGCTTCACCTATAACCTCCTAAGGTTTAACCTTTCTGAGTGAATACACATGCCTGTGCTCTCCCATAAGCCCTGAGCTCTAAAAAAACGAGTACTTTTCTTCTGGCTGCCACTCCAAATTGACAGTTCTCAGAGGCAATTGTGTCCCCAGGTCCCTCCCCACTGGAGTTTCTCAAATAGTGTGTCTTCTGGGCTTTCACAGTTCTGGGTCTCCAACCCTTCTCCTCAGAATGGATTCACTTAGAACCTCCCATTTCAATCAACCCATCCCCACTGATTTCTTTTCCAACTCTTCCTTCTGCTCTAAAATCCTCAGCCACACCCTCCCTCTCTCCTGAGGCTTGGTCTCTTTTCGGGTCAATTAGCACAAGACAATAGTATTATATACAATTCATTTATCTATCATTCCTCTAGCCCCTGAAATACTCTCAAATCCCTGATAGAATTTTGGTGGAAGAGATTGTTTTGTTTTGAGTACAATAATCTAAAGAAAACATCGTTTCCTAAATAGCAGTTAGGGTGGAGTACAGGTAGTTCCACTTTAAAGTAATTACCCTTGACTGGGCGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGGATCACTTAAACTCAGGAGTTAGAGATTAGCCTCAGCAACATAGGGAGACCCTGTCTCTGCAAAAATTTAAAAAATTAGCCGGGCGAGGTGGCGCACACTGTGGTCCCAGCTACTTGGAATACTGAAGTGGGAGGACTGCTTGAGCCCAGGAGATTGGGACTGTGGTGAGCTATGATCATACCACTGCACTCCAGCCTGGGCAGAGGCTCTGTCTTAAAAAAAAAAAAACAAAAAAAAAACAGTCGGGCTCAGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCCACAGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATAGTGAAACTCCATCTCTACTAAAAATGCAAAATTAGCCAGGTGTGGTGGTTTATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAACTGCTTGAACCTAGGAGGCGGAAGTGGCAGTGAGCTGAGATCATGCCATTACACTCCAGCCTGGGCAACAAGAGCGAAACTCAGTCTCAAAAAAAAAAAAAAATTAACGGGGAGTGGGGCTACACATCTATACTCCCAGCTACTCAGGCGGCTGAGGCAGGAGAATCACCTGAACCTGGGAGGTGGTGGTTGCAGTGAGCCGAAATGGCACTACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCATCTCAAAACAAACACACACAGAATTATCCCAGTTTGAAATTTTGGTCTCTTTCCCTAGTTTTTTTTAAGTTTTACTTTTGTTTGTTTGTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTACGGTAGCGTGATCTCAGCTCACTGCAACCTCCTCCTCCTGGGTTCTTGTGCCTCAGCCTCCTCAGTAGCTGGGATGACAGGCATGAGCCACCATACCTGGCTAATTTTTTTTGTATTTTTAGTAGAGTCGGGGTTTCGCTATGTTGGCCAGGCTGGTCTCAAACTCCTGGCGTCACGTGATCCACCCACCTCGGCTTCCCAAAGTGCTGGGATTACAGGTGTAAGCCACCACACCTGGCCCCAAGTTTTACTTTTTATTGAAGCTTAAATTGGCAAATAAGATTATGGGGCTCAATAATGGAAAAGAATAGCTACTCTAGTTCTCCCACCCCATGGGAGGCCACTTTCAACTCTTCAGCTGATTCTTTTGGTGTCTACATCTTTAAAATTATATACTTACACTGCTATTTTTGTGTTGACATTATGGCAGATGTGATTCTCTTTATTTTTTATATATACATACCTGCCCTCCAAGCATGACATTTTCTGATCACCATCTCAACCTCTCAAAATATTTTGGTTAGATCAACATTCGGCATTTACTATGATTATATAAAATGCTATTTACAACAAAATCATGTAATATATTCTAGGTTTACTTTTCATTTGCTGCATAACTTTTTTTTTTTTTTTTTAAAGAGACAGGATCTTACTCTGTCACCCAGGCTGGAGTGCAGTAGCACAATCACAGCTCACTGCAGCCTTGAATTTCTGGGCTCAAGAAATCCTCCCACCTCAATCTCCTGAGTAGCCAGGACTACAGGCACATGCCACCACACTCAGCTGATTTTTTAAAATTTTAATAGAGATGGGGGTCTCGGTTTGTACCCCAGGCTGGTCTCAAACTCCTGGCTTTAGCTTAAGCAGTCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGTCATAAACCACCAAGGTCAGCCCTTGCTGCACAACTTTTTCAATTTTTTCAATGTCTGTTAAAAATTGTCTTTTTCATTTGCTTAATATAGTCAGTTTTTCATTAATTCAACCCCACACACTCCACTAATTTGTTAAGTGACCTATATCATCTTCTCTTGACCTAGTGGTCTATGTGGATCTATTTGCATTCGTTGTGAGGGATACTTAATGGGTGGGTTTTCCCGGAAACTCCAGACCTTTGATCCAGAAAATGTTGTTTATTTGTTGATTTCCTCCCACTCTATTTTCACTTTTCTCTTTCTAGAATTTCTGTTATTCACATGTTTGCCTCCTAAGCTGGTCCTCTTGTTTTCTCTATATCTTGTTTGTTCTATCTTATGTTCCAACTCTTCCAGTCTCTCATTTCTAAATCTATCAAATCTGTAATTTCCAAAGGCTCTTTTTGCTGTCTGAATGTTGTTTAGTAGTATGCCGTTCTTGTATCATGGATGCATATTAGTCATGTTTTTTGTTTGTGTGTTTGTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGAAGTGCAGTGGTGCAATCTCAGCTCACTACAACCTCCAGCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAACTGGGATTACAGGCATGTACCACCACGCCCGGCTAATTTTTGTATTTTTAATAGAGTTTTAGGGGTTTCACTGTGTTGGCCTAGTCTTGAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGGAGCCACCATGCCCAGCCTATTAGTTATGGTTTTATTGCTTGTTTTCTTCTCCCTGCATAGTCTTGGTTGCCTTCATTTTTTTATTTAGCTCCTTGTTTCTTTGTTTCAATCTTTATTTTTATATTAGATGAATTCCTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGGAGCCCAGTGGCGCCATCTTGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGTCACTGGGCCCGGCTAGAGGCATTCTTTAGATGTTTAGTGATCCTTAACCATCTGCTTTTATTTCAGAGTGGGGGTGGTATTTTTACCCAGAGTGGGTGGGCTGATTGGTAGCTCTGAGCCTTAGATGGGGTTCATCAATAGTGGATTCTCTGTCAGGTGATCTGGCTAGGCCATTTTAGTGGAGGACCTCCAATGTCAGTATCTTTAGGTCTTTCCTCTTGGACTGTTCAGTTTTTCCAGAGAAGTATCTTCCCATTTTATGTGTGGCATTATGGACCTGGCATTCTAGAAGCTGAGTAAGAAGGGAGGCAAGATCATATTCCATAAACCCAGGTTCCCAGTTGAGCATGTGACCTAATACATCACTTTCCTCTTCATTCCAGTTTAGTTTAGCATGTTTTGACTACCAAGTCTAAATACTTGGTCTAATTATACCCATTGGTCTAAATGCTGGGGATAAAGAAATTATTAGAATGCCCTATTTTTGCCACCCCAGGTTCAATTTAAGCCAATAAAAGCGATTGAACTTTAGATATTTAAAGTTCTATGCTAGCATTGTGGAGAGGAAAGATCTTGGTAAGAGTTTTTGTCTCAGGAAGCTCATAGACATGTGTGAGGAGGTACAAACAAATTATGAAACCAAAATACAAGGCAGAACATGAAATAAGTGCAGCAAAAGAGAAGAAGTATTGTGGTTGTTTAGAAAGGAAGAAGAGATTCATTTTGATTGTGGGGACATGAAGGAGGTGGAGATTTGCATTGGAGCTTTAAAACCGTACAGAATTTCACAACCAGAGACGGGGGCGGGGGGAGTGCAAGCAAAAGCCCGAAGATCTGGAGTTTTAGGATTCTGTTTCTCCTCCCTGCAG
Seq C2 exon
GGTGACTCTGGGGGCCCCCTCCATTGCTTGGTGAATGGCAAGTATTCTGTCCATGGAGTGACCAGCTTTGTGTCCAGCCGGGGCTGTAATGTCTCCAGGAAGCCTACAGTCTTCACCCAGGTCTCTGCTTACATCTCCTGGATAAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139610-CELA1:NM_001971:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)