RnoINT0033812 @ rn6
Intron Retention
Gene
ENSRNOG00000004725 | Cela1
Description
chymotrypsin-like elastase family, member 1 [Source:RGD Symbol;Acc:2547]
Coordinates
chr7:142306234-142312128:-
Coord C1 exon
chr7:142311983-142312128
Coord A exon
chr7:142306384-142311982
Coord C2 exon
chr7:142306234-142306383
Length
5599 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTGTTGTTCTTCCCCGTCAGGGT
3' ss Score
9.53
Exon sequences
Seq C1 exon
CCAATGGGCAGCTGTCTCAGACCCTGCAGCAGGCGTACCTGCCCAGCGTGGACTACAGCATCTGCTCCAGCTCCTCTTACTGGGGCTCCACGGTGAAGACGACCATGGTGTGTGCTGGTGGAGACGGAGTCCGCTCTGGGTGCCAG
Seq A exon
GTAAGTACGCTCAGGGGTGAGCCCCACGGGCCTCCTCTGGACACCCCACCTTTTACACTCTCTCTGTTTCTCACCTGCTCTCGGACCCGTGGACAGATTCAGCTTCCTACTCTGTCACAGAACCTCGGAGTGGGTTCTGTGAGAATCCCTCCCTCAACATCGGCACTTCAAAAGCTGCGGTGTGGTCTGACTCTCGCCTGTGTTTACCTACCTGTGTATTCTTTAGAAGTTGCTTATGACCTAAATTCTTTCAACGGTAGCCAGGGGCTGGGCCTGTGGGGATGGTGGTAGTTAACTGTATGGCAGGAACTCTCAGTCCGGTCCGTCGGTCCCTCTTCTTACTTTCCCACTGGTGCCCTTTACCCTGGTGCTCGCTTGCAGGAGCAGGTGCAGGTAGGAACAGCACAGGAACCTTGTAAGACTGCGCTGAGCAATCTTAAAATCTTTCTTATACAATGCACAGGCTTCTCTATTTAAACAAAACCAAGCCACAGTAAAGCGCATGGCAGGTTGTTCAGAGCAGTTCAGCCTGTGCACATGGTGTGTCTCTCACACCGGGAACTGTGGTGGGGGAGGGGGGTTTTGCTGGGATACAGAGCGGATTGGACAATGGCAAATGAAGGAGCCAGGAACATTGAGGTATTGTAACACTGTGACTAAATGTTTTGACAAAGGCCGACTGGCATGGAGGCCCACAGTACCACCCTGTTGAGGTGTTGTAACACTGTGGCTAAATGTTTTGACAAAGGCAGACTGGCATGGAGGCCCCCAGCATCTCCCTCTGCTGCAGCCAGGAAAGTTTACCTTCCCTGAGACAGTGGAACCTCCCGGGAGTCCCAAAGGTCAAGTAGAAATAAACCACGTGAAAAGGAGGGAGAGTCATTCAAAAGAAGGGGACTGGAACAGATAAAGTCACCAGGCTGAGAATGCCCAGGGACTGGTCTTTCCCTTCAGCATGGGCAGAGCTGGGATCAGGGGCTCACAAACCATATCCAGCCTGCTGCCTGGTTCTGTATGGACCACGAGCTACTGGCTATGGTTATAAACTTGGGAAATTTTTTTAATGAATCAGAAGGGGTATTTCGTCAGCCGGGAGGCGCTGTGGCGTGAGCATAGAGCCCTGGGTTCCATCTGAGTTCCATGGATGGAGCTCCATGAGGCATGGAGGTGCTCGCCTATAACCCTTAGGGGGGTAGAGGACAGAGGCTCAGAACATGGAGGTTCTGTTGGGCTACAAAGCCAGTTCTAAGGCCAGCCTGGGATACATGAGGTGCTACCTTGAAAACAGAAAAAGAAAAAAACAAAACAAAACAAAAAAAAAAAAAAACAAAAAAAAAACAAATGGAGCTTGGGAGAGAAAGCCAGGTGAGGCGCCGCCCTTGAGAACAAATATGGTCCCTCACCCCAAGGAAAAGTTGTAGAATAATAAGAGAGGGGTGGGTTGCTGGGGAAGGCCTATAAGAACATAAACGCTTGAATTCTTTGGGGGTGGATGGAAGATAAGAGAACATACTGAGACCCAAGAAAGGGCAGAAACAGGCAATAAAAACAAAACCTGGGGAAGACCGGTGGGCCATTCCACAGATGAAACTGTGATGGATGAGCCTTATCCCTGTGAAGTAACTAATTGGACAACTAGTTGTCATGGCGAGAATGTCTGTAGATAGTGGGGACACACACACAACGGGCAGGTAAGGGTAAGAAGGCATTCCTCAGGGACCATTGGATGGGGGAGAGGGACAGACAGAAGTCACAGAAAGATGGATTTTTAATGGGGGAGAAAATTGAGGGTAACAATAGGACAAGATGATTTTCTGGAGCGCAAGGAGGGCAGATAATAGACGGACCATTATCCCAGTAAAGAAGGGAGAGCTAGGGTTGGGGATTTAGCTCAGTGGTAGAGCCCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCCGTCTCCAGCTCCCGGTTTTAACTGGGGCTAGGGTTGGGGGGAGGATGGGCGTGTTCCCTGATCGCGGAGAGGTTTGCAAGCAGGCTGGCGGGTGTTCTATTTTATTGCTTCTGGTTATTCATGAACTAGGAAATCAACATGACTGCAAAAAAATTTAAATAAATAGAAGTGCAAAGGTTGTGCAAGCCTAGGAGAACTACCGTGAACGGGAAAGGGGTATCCTTAGACTGGTGAGCTTGGCATATGCTTCGCTCACCCTTCCTAGGCTAACGGGAACCGGAACCGGAACCGGAACCGGAACCCGGAACGGGAAAGGGTTACCCTTCAAGACTGTGAGCTTGGCGTATACTCCCTCTCCCTCTTCCTCCGTAGACCTAGTTAAAGGGGTTGGATCAATTCCAGGCTGGTTTTCTAGTTCACTGGCCACAGCACAGGAATGCAACTTGGTTGCAAGGTCCCAACTTTGTGGAAGAGGAAGAGAAGTTAGCCGGAGGCTGGCACGCGGGTCACAGCAGATCAGAAGGAGCAAAGGGATTTTGTGAAACCAAAGAACTGCAAGAAGGAAAAGTAGCCACTGCTTTTGTAGTTTCCCTTGTTAAAACTTAAATGATACGATGCTGGGCATGGTCACACACTCCTTTAATCCCAGCATTTTGGAGGCGGAGGCAGGTGGAGCGCTTAGCGTTCCAGGCCAGCCTAGTCTACTTAGTGAATTCCAGGCCAGCCAAGGGGTACAAGGTAAGACCCTGTCTCCAAATAAAAGCAACTAATAATAGTAATAATAATACCTTAAGAGAGAGACAGACAGGCAGGCTAATGTATAGAACAACCTTCTCTAGATCTTCAGCAGACAGCTACCCCTGTCACTCCTCAAGTCTAGCCTTTCTGACCATATTCACACATCTCTGCTTTAGAAAGATCTTCTGTTGTGACCAAAGGATGGGGGGTTATTTCTCTAAACTGATACGTCTTTGAGACAAATGTGTTTCTGAGTCCTTTCATACCGGAGGTCCCCCAGACAGTGAGCCTGCCTGAGGTCTTCAGAGTCCTAAGTAAGCCCAGGTCTCCTCAGGCAGAATTCAGTGGGTCTTAGTCTGTACATCCACACTGGGTTCTCTTCCCCTTCTGATCCCACTCTTCGGCCACACCCTCCATCTCTCCCAGCCTCCCCCTTACGTCAGTTAGTGTGATGCATGGATATTACACAGACTCAGTTCTCTTCCATCCCATTAGCTCTGAGATACTCTCAGAACATTGGTGGGGGCTCGGGGGGTGGAGAGATGGCTTGCCTGGCAGCTCAACCCTCTTTTAACTTCAGTCCCAAGGGCTCTGACGTCCTCTTCTGACCTCTGTGGACAGCAGACATGCCCACGGTGCACAGGCATACAAACAGGCAAGCATTCACACACATAAATCTTAGCCTTCCCCCTCCCCCCTGAGTTTGTTAGGATATGGGTAGGAGAGGATTAGATTTCTTTGCTTGAGAACAATCACCTGAAAATGTTGCCCTTTCCCAAGCAGCTGGGTTACAACAAAACCTTTAAGGAATTAAGAATTCGCCACAGTTGAACATTTTGGTCACTTTCACTGATTCTTCTTTTTGTATGTGTAGTGTGTGTGCGATTGTGTGCATCGGGTCTCACTATGAAGCCTAGGCTAGCCTGGATCTCAGGCTGTAGACTAGGCTGGCCTCCAACTCACAGAGATCGCCTGCCTCTGCCTCCCCAGTGCTGGGACTAAATGTGTACGCCACCACGGCCCAGCTTCTAAAGTCATTCTCCGGGTGTTGTGCACCTTTATTTTGGAGCCAAGGTCTCTTACCATCCTGTAAGTCACAAAATAAGCTAGGATCCAGGATCTGTCTGGATCCAACACTGCTCCCAACACTAAGATTACAAGTGAATGACACTATCCAGGGTTTTTTTTTATTTATTTATTTATTATATATAAGTACACTGTATCTGTCCTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTTTCCAGGGGTTTTTATTTTAAAATCTGGGTTCTGAGGATCAAATTCAGGCCTCACACACCGAGCTGTCTTCACAGCTGCCTCTTCCTTTTAACTTTAATTTTTATTGATGCCGGATACACTGCTCCTGTTGGCAAATGAGACCATGTGGCTCAGTGACAAATAGCAAGACGGTCGTTCGTTCCGTTAACACAGTTCCCTCTCCAGAGGGCACCACTTTCAGCTAATCTGTTTTTGGTCAGGGACCATCTATGACCAAACTATGGAGCTCAAACTGGTCTGGAACCCACAGGGTCCTAAATTCTAGGATTACAGGTGTGTGCCTCTCTGTCCGGCACAGCTGATCTTTTGAGAGCTGCCTCCATGTTGTAAGCAGACGAGGATATACATTTACACACCCTCATTGCACACACACTTTGGGGCTGTGGAGATGGCTCAGCTGTTAGGAGCGTCTCCTGCTCTTGCAGAGAACCAGAGTCCAGTTCCCGGCACCCATGTCAGGTCGCTTACAAGCTTCAGGCTCCTGTAACTCAAGACCCAGGGGAGATCAGACTCTCTTTGGCCTCTCTACAGACACATATACATAGTTAAAAATTAAAAATAAAATTAGCCAGGTATGGTGGTTCGTGCCTCAAAAAAATTAATTTAAAAGTAAATGTATGTATGGGCAGTTGTGAGTGTCTCTGGCACCAGCAGAGGCCAGAGAAGGGCATAGATCACCTGGGACCAGGGCTAAGACAGTTGGAACCCACCATGTAGGTGCTGGGAACAGAACCTGGATTCTCTGCACGAGCAGCAAGTGCTCTTGACTACTGGGTCATGTTTCCAGTCCCCTCTGGGCCTTGTCAAAAGAGAGGGATGGGAGGAAGAGAAGGGAGGGAGGGGGAGGTGGAAAAAGTGTGTGTTAGCCTGTGTGAAGCCATGGGGTTAAGTTTCAGGCCCCATCACAGCGATAGCAGTAAGCATGGCAGCCAGCTCAGGGAGGCCGACGACCGTGTTCAGCCCTCGGAACCCACCGTGGAAGGAGAGAGCCCACTCCTGAAAGCTGCCCTGCAGGAGGAACAGCAGAGACCTAAAACCGTAGCCCACCCACCCAGTGCTGCCATGAGAGCCACTTCAGAGCTCCACTCCCTTTGCATCCACACAGCCCAAGGTTCTCCTTCTTTTCCAAGCATTGTCCTTCACCGTCCCTGCAGCACTCATTCACGTCCTGCCTTGGGTTATGGTTTTAGAATTTGTTTCGGCCTCCCCCACACTCCGAATTTTGGGGTTATTGTCTTATTACTGTATTTCTTCTCCACAAGGAGGGTGCACAAAACTTTAAATTCTATTTTCTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTTTCTGTGTGTGTCTGTGTCTGTGTGTGTCCCTGTCTGTGTCATGTCTGTGTGTGTCCCTGTCTGTGTCATGTCTGTGTGTGTCCCTGTCTGTGTCATGTCTGTGTGTGTCCTTGTCTGTGTCTGTGTGTGCCCATGTGCACAAGTGGGAAGGAAGTGCACTGCATTTTTTTTAATTCTGTTGTTCTTCCCCGTCAG
Seq C2 exon
GGTGATTCTGGGGGACCCCTCCATTGCTTGGTGAACGGCCAGTATTCTGTCCACGGAGTGACCAGCTTTGTGTCCAGTATGGGCTGTAATGTCTCCAGGAAGCCCACAGTCTTCACCCGAGTCTCTGCTTACATTTCCTGGATGAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004725:ENSRNOT00000006351:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]