GgaINT0002232 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:53094829-53096032:-
Coord C1 exon
chrUn_random:53095922-53096032
Coord A exon
chrUn_random:53095837-53095921
Coord C2 exon
chrUn_random:53094829-53095836
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCATTGTGTGCTAATTCTAGATT
3' ss Score
6.51
Exon sequences
Seq C1 exon
CTCCACTTCCAGCCCCCAAACCCGTGGTGATCTCCCTGCTTGAAGGAGGGGAAGACCCCTGGATCCCAGATGTGCGTAGCCTTGAGGCCGTGCCAGGAGACCTGAGCCCAG
Seq A exon
GTGAGGTGGTGGAGAGAAGGAGGAGACAGGCTGTGAAAGCCATCTGTGAATGGGCCAAATCGTTGGCATTGTGTGCTAATTCTAG
Seq C2 exon
ATTTCTTCTGCGATCCAGCTGGGGCTGGGATCACAGATTTTAAGGAGGATGTGCAGAAGAGTGGTGTAGCAGAAAGGCGGTGCAGTAGTGCATCTGTAAGGAAAACCAGAAGGGATGTCCGGAGTGGCCTGGAACACTTCAAGAAGCCACTGGGAAAGCATCCTGGAAAGAGAGCAAGGAACCATCTGGGCTTCAGCTCAGGTCAGAAGGAGCTGGAAGACTCCAGGAGTAAGCTAGAAAAAAAATGCCAGAAAACAAAGCAGAAGCATTGCCCTGACTGTGGGAAAAGCTTTAAAAGTAATTCTGAATTTGTTACCCACCAGTGTGTAAACTCACAGGAGCATCTCTACAAGTGCTCTGATTGTGGAAAGAGCTTCAAATGGAGATCCAACCTCACGCGCCACAAGAGCATCCACGTGGAAGAGAGACCCTATAAGTGTCCCGAGTGTGGAAAGAGTTTCAGAATCAGTTCTTACCTCATTCTTCACCAGCGCATTCACACAGGAGAGAGACCCTTTCAGTGCCATGATTGTGGAAAGAGGTTCAAAAGGAGTTCCCACCTCATCCACCACCAGCGCATCCACAAGGGAGAGAGACCCTTTCAGTGCTCTGAGTGTGGGAAGAGTTTCAGAAGCAGTTCAAACCTCACGGTACATCAGCGCATCCATACAGGAGAGAGACCCTTTCAGTGTTCAGAATGTTCAAAGAGCTTCAAAAGCAGTTCCCACCTCATCCAGCACCAGAACATCCACACAGGAGAGAGACCCTACAAGTGCCCTGAGTGTGGGAAGGGCTTCAAAAAGAGTTCCCACGTCACTTTCCACCAGCGCATCCACACAGAGGAGAGACCCTACAAGTGCCCTGAGTGTGGGAAGGGCTTCAAAAAGAGTTCCCACGTCACTTTCCACCAGCGCATCCACACAGAGGAGAGACCCTACAAGTGCCCTGAGTGTGGGAAGAGCTTTAGAAGCAGTTCTAGACTCAACTCCCACAAACAAGTACACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022063:ENSGALT00000022355:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=7.4),PF046067=Ogr_Delta=WD(100=13.6),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF097235=Zn-ribbon_8=WD(100=13.4),PF134651=zf-H2C2_2=WD(100=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATCTCCCTGCTTGAAGG
R:
CACTACTGCACCGCCTTTCTG
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]