GgaINT0002388 @ galGal3
Intron Retention
Gene
ENSGALG00000022619 | ZNF541
Description
NA
Coordinates
chrUn_random:734302-734762:-
Coord C1 exon
chrUn_random:734625-734762
Coord A exon
chrUn_random:734361-734624
Coord C2 exon
chrUn_random:734302-734360
Length
264 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGTTGTTTCTTCACCCCCAGGGG
3' ss Score
10.59
Exon sequences
Seq C1 exon
AGGTCGTGGCGTGTGCCCGCTGCGCGCAGGGAGAAGCTGTCGGCAGGGCTGGCGGGCACAGCATCCCCCAGCCAGGTGGCCATGGCCTCCTTTGCACCACGGCAGCAGAGCGGGCTGACCGTCCTCCAGCGCATCCAG
Seq A exon
GTGTGTGAGAGCAGGGAGGGGGCGGGCAGCGCTGCCGTCGGTGCCTTCCCGCTGTTGGTGGTCCGGCTGTCGGGGTGACTGCAGCCCGGCTGCGTGTCTGCGTTGTGCAGCTGAGGATGGTGGGTTTGGTGTCCATCGTGTGAGCTGGGGGAGTGCTGGTTAACGAGCTGGTGGTGGTGGTTAACGAGCGTTGGCTGCTGAGAGGTGCAGTGACAGCGTTGAAGCGGTGACACCTCGTTCTGACTGTTGTTTCTTCACCCCCAG
Seq C2 exon
GGGGGAAACATCTGCAGCTTCCCAGGCACGGCGCAGGAGGACGGCGCGTCGGCCGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619:ENSGALT00000036197:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAGGGAGAAGCTGTC
R:
CCTGGGAAGCTGCAGATGTTT
Band lengths:
141-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]