BtaINT0165691 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54943153-54947197:-
Coord C1 exon
chr18:54945379-54947197
Coord A exon
chr18:54943212-54945378
Coord C2 exon
chr18:54943153-54943211
Length
2167 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
AGGTGTGCTTTCATCTCCAGGGT
3' ss Score
9.44
Exon sequences
Seq C1 exon
GACCGGACACATGCTCACCCACCAGAAGACCAAGCCCTTCGTGTGCATCGAGCAGGGCTGCAGCAAGAGCTACTGCGACTACCGCTCGCTGCGCCGGCACTACGAGGTCCAGCACGGCCTGTGCATCCTCAAGGAGGTGCCCCCGGAGGAGGAGGCCTGTGGGGACTCACCCCACATGCACGAGGTGGCAGGCCAGCCCACACCATCCGGCCTGAGGTCCCCCGGTTCCCTCCTGCCCAACCGAGACTTCCTGCGCTGCCTCGTGAACAGCATCGTCCACCACAAGATCCCTTCCCCGGGGCCGGCTGGGCTTGCGGACAGCGGTGAGGGGAGGAACATGGCCTGCTCCTGCCCGTCCTCGGGGTCTTCCTGCTGCGGCCCAGCTGGCACCCCGGGGACCCTGGGCCCTGACGTTCTCGAGGAGTCGAGGCCCTCAAGGAAGGAGCCTGCCGCTGACGTGTTCACGGCCATTCACTCGCGGGCGGCGGAGAGCAGCGGCCCCGACCCAGCCGAGCTAGAGCCACTCCAGCTCTCGTCCTCCCTGGAGGGCTGGCCCGAGGGCGCCCCTCTGCCCTCCTGCCTGCCTCTGTTCCGTGGCCAGACAATCCCCACCACTGGTTCCCAGCCATCAAGCCACAGTTTCCAGTGGCTGCAGAACCTGTCGGGCTGCCCCAAGAGCAAAGGGAATGGTATGTTTGTCGTCCATAAGCCGCCATCCCAGGAGGCCTCTGAGCCTGGCCCTGGGCTCAGCAGCACCTCCCTAGTGGGGGAACCCTCAGCTGGCCTGGGGCTCGGCCCAGAGGACGTGCCGCCCTTCCCTCCCATGCTCCTGAAGGCTCCCGGGGAGGCCTCGGGGGACCCCAGATTTGCCTGTGCCAGTGGGGATGATGACTGCTGGGCTCCCAAGAAGAGCAAGTTTGACTGCGACTCCTTCCGGTGGCCGAAACCCGGGGACCCTGGCTCGCAGGATCCTGGCTTGAAGCCCAGCAGCCTCTCGTCGGATGCCACGCCGCTCTTCCGGCAGCTCTTCCTGAAGTCGCAGGAGTCCCTGGTGAGCCACGAGCAGATGCAGGTGTTCCAGATGATCACCAAGTCCCAGCGGATCTTCTCTCATGCCCAGGTGGCCACCGCTTCCTCCCAGCTCCCCACTCCCGATGGCAAGCAGGGCCCCCTGAAGCCGCTGCAGGGGCCACGGCCACAGCAGCCCCCGTCTCTGACGCCCACTGTTGACTCTCTCCGTGCTGGCCCCATGAACCCTGAGCCAGAGGGCTCCCCAGCCCGCCGGAGAAAATCCACACCCACTTTCCCCAGGGAGGCCTCACCTGGCGGCATGAGCCGGGATGCAAAGGGTGGGCCAAAAGTGGCTGCTGCTCCGCCAGCCCTCACAGCGTCATCCCTGGACCCTCCCGGGAACCCGGACATCTCTTCTCTGGCCAAGCAGTTGAGGTCCTCAAAAGGGACCTTGGATCTGGGCGATATCTTCTCTCCCGGGGGCCTGCGTCAGACCCAGTTAGGAGGGGACGAGCCATCTGGAACCCACCTCCCAGGGAAGCAGACCCAGGCTGAGAATGGCATGGCCTCTGGGGCCACAAAAGCCGAAAAGGGCCCGGCCTGCTCCCGGGGTGGAGGCTACAGGCTCTTCTCCGGCAACTCCAGAGCACAGCGCTTTTCAGGCGTCCGGAAGGAGAAGGTGAAAATGGATATGTGCTGTGCGGCTTCCCCGAGTCAGGTGGCCATGGCTTCCTTCTCGTCGGCAGGGCCTCCAGCAGACCTCTCCAGGGACTCCAAGTCCAAACTGACGATATTCAACAGGATCCAG
Seq A exon
GTACCAGGGCCGTCTCACGGACCTAACCCTACAGGAGGCAGAGTCTGGTCATTACCCACTTCTGGGTTTCTGACTTGTCCAGGCACCTTGTTTAACCTCAGCGAATCCTCAGATGCAGTTGTACAGAGGGGGAGGGAGGGTTCAGAGAAGAGGTGGTCCCTCCCATCATCCCCCTACCGCGAGCCCACCACGCACGCACGAAACAGGGCTTTCGAGTTGGGAGAGACACTCGGTGTCACGTTGCTTCACTACACGTTTTCTGTTTGCTTCCTTTCTCCCTCTCGCTTCCTTTTGGATCTGCCTCCTTCGCGTCTTCAGAGGATGTGAAGGTAGCGCTCCTCGGCCTTTGACGTTGCCATGTGAAATGCCGTGTCTTTTCTGGTCGTGAGTCACGGGTCACAGGTCTGACTTGGCCCCCAGCTGCTGGCGCTGTGCCAGTCGGCCCTCGTGGAGCGCTCAGGTCCCCCACGTGGCGCCCACGAGGTCCCAGGAGTAGAGGGCTCGGCCTTACCTCCTGCTGACCTTCTGAGGTCCAGCATCCTTCTGTCAGGCCACAGCTATCTCATCCTCTTCTTTAATTTTTTTTTGATAGCTTTAATATTTACATGCTGTCTCACTCACCATCTTGTTTATTTTTTGAGATTAAGTTTTCAGTTTTATATTTGGTTATTTTATTTTGGCCGCGAGGCATGTGGGATGTTAGCTCTCCGACCGGGGGTTGAATCCATGCCCCCTGCATTGGAAGCATGCGGTCTTAACCACTGGGCCACCAGCAAGTCCCTGACTCACCACTCAAAAATGTGCCACCCAGTGGCTTTTGAGCATGTTTACAAGGCTGTGCACCCTTGCATTTCACTGCTCTTTGCCTAAATACTTCCATCGCCCCCAAGAGACACCCCATACCCTGCTGTCTACCACAGTCTCTCCATCCCTCCCAGCCCCTAGCAATCATGAGTCCACCTTCTGCTTCCATGGATTTGCCTGTCTTGGACACTTTGTATGATTGGAATCATACGTTGTGTGGCCTTTTGTGTCGTTTGCTTCTTCCACTTAGTACGATGTTTTCAGAGTTCATCCGTATTGTAGCGTGGATCAGAACTTCTTTCCTTTGTATTGCTCAGTAGTTGTCCATTGTACGCACACGTGTGGGCATCTGGGTTGTGTTCACTTGGCCATTGTGATAGTGCTGCCCTTAACGTCTGTTATTGTTTAGACATATGTTTTCATTTTTCCTGGGAGGTAACACCAGAATTGCTGGATTATAGGGTAATCCTCTCTGTTTCAGAAACTGCCAGACTTTTCCAAAAACCGTCTTACCTTCCCACTCAGAGTCTGAGGGCTCCAGCTTCTCACCAACACTTGTCATCGTCCAGCTGTTTCCTTCTGATACAGCCGCCTTAGTGGGTGGGAAGCGATAACCTGATTATGGTTTGATTTGCATTTCCCTGATGGCTACAGTCTTGAGCATCTTTTTATGTGCTTATTGGCTATTGATACATCCTCTGGTTAAGTGTCTGCTCAGAGACTTTGCCCATTTTTAAGTTGGTTTGTGTTATTACTCTTGAGCTGTGAGAATTCCTTATGTATTACATATACAAGACCCTTACCAGATATGTGATTTGCGACTCTTTTTCTCCCATTCTGTCTTTTCACTTTTTAAAAAATGTTAGTTTATATTCTAGTTGACTTACAGCATTGTGTCGGTTTCAGGTGTACAGCGAAGTGACGCAGTCATACGTGTACACGTATCCATGAGTTTTCAGATTCTTTCCCTTATAGGTTATTGCAGGATGCTGAGTAGAGTTCTCTGTGCTATACAGTAGGTCCTTGTTGGTTACTTGTCTTGTATATAGTCGTGTGTTTCTGTTAATCCCAAACTCCCTCTCCCCACCTTTCCCCTTTGGTAATCATAAGTTTGTTTTTGAAGGCTGTGACTTTTCACTTCTTGATGCTATCCTTTGAAGCGCAGAAGGTTTCAGTTTTTTTTTTAAAAGAAAGTTTACGTTTTGCTGATTTGTTCTGTCTTCGGTTTTGGAGTCACCCAAGGAACTGTGGCCTGCTTCAGGGCCACTAAGAATTACAGCCGTGTTTTCCCCTAAGTGCCTCACAGCTTTCACTCCTGCACCTCATCTCTGATCTGTCGGCTGAGGTGTGCTTTCATCTCCAG
Seq C2 exon
GGTGGAAATATCTACCGGCTCCCCCACCCGATGAAGGAGGAGAACGTGGCCAGCGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606:ENSBTAT00000061246:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.716 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(30.4=1.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development