MmuINT1035632 @ mm10
Intron Retention
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16077972-16081736:+
Coord C1 exon
chr7:16077972-16079826
Coord A exon
chr7:16079827-16081677
Coord C2 exon
chr7:16081678-16081736
Length
1851 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
AGATATCTTCTCATCTCCAGGGT
3' ss Score
7.22
Exon sequences
Seq C1 exon
GACTGGGCACATGCTCACCCACCAGAAGACCAAGCCCTTTGTGTGCATTGAGCAAGGTTGCAGCAAGAGCTACTGTGACTACCGCTCGCTGCGCCGCCACTATGAAGTCCAGCATGGAGTATGCATCCTGAAGGAGACTCCACCAGAAGAGGAGGCCTATGGGGACCCAACTCACAACCATGATGTGGCTAACCAGCCTCCACCCAGTGGCCTGAGGTCCCTGGGGCCCCCAGAAGCTAGGTCCCCTGGCTCTGTCTTGCCCAACAGAGACCTCCTTCGCTGTATTGTGAGCAGCATCGTCCACCAGAAGATTCCTTCTCCTGGCCCAGCAGTGGGGCCTTCTGATACTGAAGCAAGGAGCTCAGCCTGTGCTTGCCCCACCTCACTGGGATCATCATCATGTACACCAGCCAGCACCCCAGTGGCCCTAGGAACCCTGGGCTCTGAGATTCCTGAGGAAACTCATCCCCCACGGAAGGAAGCTGCCACCGAAGTGTTCACACCTGTCCAGTCAAGGGCAGCTGAGAATGGTGTCCCCGATCCACCAGAGTCAGAGTTGGAGTCAGAGTCTCCACGGCTTCAACGGCCATCCTCCCTGGAAGGCTGGCCAGAGGGCAGCTCTCTGCCTGCCTGCCTGCCTCTCTTCAGAGGCCACTCTGTCCCCTCAGGATCCCAGCCTTCCAGCCACAACTTCCAGTGGCTCCGGAACCTGCCTGGCTGTCCCAAGAACAAAGGCAGCAATGTGTTTATGGTCCACAAGCCCCCTGCAGTGGCATCCCGGGAGGGCTCTGAGGGAGGAGGCTCTGGACCCAGCAGCACCCCTACCTCAGTGGAGCCTTCACCCAGCCTGGGCACCACCCAGGAGGAACTCTTGCCATTTCCTCCTGCACTACTAAAGGCCCCTGGTGAGGCCTCCAGTGAAGTTCGGCAGGCAGCTGGGGAAGATGAAACCTGGGCTCCCAAAAAGTGCAAACCTGACTGTGAGTCATTCCCATGGCAGAGCCCCACTGAGCTTGGGCTCCAAGATGCACAGAACCCAGGTGGGCTCCCCTCAGATGCCACGCCCCTCTTCCGGCAGCTGTTCATGAAGTCACAGGAGTCTCTAGTAAGCCATGAGCAGATGCAGGTGCTCCAGATGATTGCCAAGTCCCAGCGGATCTTCTCCCATACTCAGGTGGCTACAGCCTCAGCCCAGAGACCAGGGCCCGAGGGCAAGCAGTCCACTCTGAAGCCATTGCAGGGGCCATGGCCACCACAAACTCTGCCACCAGCACCCACTGTAGACTCTTTCCAGATAGGCCCTGGACACTCAGAGCCAGAAGGATCCCCAGTCCGCAGGAGGAAAACTATGCCTGCGGTGTCCAGAGAAACATCTCCTGGTGGCCCTAGGCGAGACACAAAAGGAGGCCCCAAAGTGGCCTCTGCACCACCATCCCTCACAGGGCCAGGCCTGCTCCCCTCCCGGAATCCAGACAGCTCTTCATTGGCCAAAGGGACATTGGACCTGGGGGACATTATCCCCAATGCAGGCTCAAGGCAGTCCCAGTTAGGTGGAGATGAGCCAGCTGGAACCCAGCTGGTTGGGAAACAGGGGCAAGGAGAAAATGGCCTGGCTTCAGGGGCCATGAGAGGTGAGAAGGGTCCAGCCTGCCCCCGAGGTGGAGGCTACAGGCTCTTCTCAGGGCACCCCAGGGCCCAGAGATTCTCAGGTTTCCGGAAGGAGAAAGTGAAGATGGATGTGTGCTGTGCAGCTTCTCCCAGCCAGGTGGCCATGGCCTCCTTTTCATCGGCTGGGCCTCTGGCAGATCCACCCAGAGACATGAAGTCCAAGCTGACAATCTTCAACAGAATCCAG
Seq A exon
GTATTTGTAGTCCTCTATTGTGTTCTGGGCTGTGGCAGGGCTATGTGTATGTCCTTGGATTTATAGCATTGGTTAACTGTCCAGGTACTTCCCTCACTGTAGTAGGTCTTCAGATGTGACTTTATAAGAGGCACTGATGGCTGTTGTCTACTAAGCTACCTTCCTTGCTTTCCTTTGCCTCCTAATTCCACCTAGATTCCCCTCCTTCAACTCTTGAGCAAGATAAAGGTACAGGCCTCCTCCCTTAACTGTTAACTACATGTGATGGCTGTGCATTCCCCACACGTGCACAGAACCCAAGTCCTTTGTGCATCATGCAGTGACCATCTGCTCTGGGCACTTAGCCACTCCTCTTAGTGAAACCAGCATCATTCCTTCCATCTCACAGCTACCACTTTATAAACATTTACATCTTTGTTAGCCAAATGATGTATAATGAACCCTTACAAAGTTGGAGCTTTGGCAGACATTGGTATAGTCACAAGTTTACACAACTATTACTGTTGGCCAGAAAACTTTATCACTCCAAGAAGATACCCTGCATCCCTTAGTAATCACCCCAGTCTTTTGCTCCTTCTACCATTATCCTTTCAGCCCTGGGTACCCACAAATCCTGTCTCCATTGGCTTAACTGCTCTGGACATTTCATGTCAGTAGAGTCAGATGTCTGTGTCTGGCATTGCCTGTTTGTACCACATGATTAAGGTCCATTCATATGGCACCATCTGTCAGTGCTTCATTTTTTTGTAAGAAATTAAAACAATTTTTACATTTATTTAGACTCAGGGTATGTGACTTTAACTGACCTGGGACTTGCTATATAGTCCAGGTTGGCCTTGAATTCACAGAGTTGAGTTGAGATCAGCCTGCCTCTGCCTCCCCCGAGTGCTGGAATTAAAGATCTGTTCCATCTGGCACATTTTTTGTTGGGGGTGGGTATTAGCATGATCATGAGCGGTCCACAGAGGTCACGTGGGACTCAGAGGGCAGCCTGTGGGAGCTGGTTTTCTCCTTTCATCTGATTGGCAGCAAGTGCCTCTTCCTCCCTCCCCCCATTTTGCTACCTACCCTACTCCATTCCTTTTTCTGGCTGAGCAATGTCCCGTGGGTAGACAGGCCAGATTTTATTTTGCCATTCATCAGTGGACTATTTCCACTGTGGCTCATGTGAGTGGCTACTGGGAAGCTGTGTACAGCTTCTTTCTTGTGGATGCATGTTCTTGTTTCTCTTGGCTAGACCCAAGGCCTGGAATCACCGGATCCTAGAGTCTCGTGCTCAGTGCTTAAGGAGTACAGACTACTTTCTAGGAAGCAGCCGCTTTCCAGTGCCGCTGCTGTACACAAGTGCCCTGTTTCTCCATGCGCTGTGCTGTCACAGTCACACTGTCACAGTCACACTGGGCCATGCAGTGCTGTCTGCTGCTGCTGCCAATGGCGTGCCCTGGCATTAGAATCCTCCCGTGTGCTTATAGACCACTTGTGAAGTGGTGTCTTACTGACTTGCATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTATACACATACATACATACATACATATGTATATATATTCTGTATGTACATCAGACATGTGACTTTATCTTCCCTTGTGTGGGCTGCCTTTTCATCTTATGTGTGAATATTTGTGGGATTGAAGCTTTTAATTTTAATGAGTCCAGTGTGTCTGTTGGGTTTTCTGCTTTGCTTTGGTGTCAAATCTGAGACACCATTGCCCAGAGCACCATCAAGCAGACTTCCCCAATGCTGTCTTCCTTGTTCCTTTGTCTGGGCTTTGCTGGCTCAGATATCTTCTCATCTCCAG
Seq C2 exon
GGTGGAAACATTTACAGACTCCCCCATCCAGTGAAGGAAGAGAGCTTGGCAGGCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796:ENSMUST00000209369:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.815 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(30.4=1.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCCCAGTTAGGTGGAGA
R:
CTTCACTGGATGGGGGAGTCT
Band lengths:
355-2206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types