HsaINT0187578 @ hg19
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48044150-48049237:-
Coord C1 exon
chr19:48047383-48049237
Coord A exon
chr19:48044209-48047382
Coord C2 exon
chr19:48044150-48044208
Length
3174 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
AGATGCATTTTCATCTTCAGGGT
3' ss Score
8.74
Exon sequences
Seq C1 exon
GACCGGGCACATGCTCACCCACCAGAAGACAAAGCCCTTCGTGTGCATCGAGCAGGGCTGCAGCAAGAGCTACTGCGACTACCGCTCTCTGCGCCGGCACTACGAGGTCCATCACGGCCTGTGCATCCTGAAGGAAGCCCCCCCGGAGGAAGAGGCCTGCGGGGACTCCCCCCACGCCCACGAGTCGGCCGGCCAGCCGCCCCCCAGCAGCCTGCGGTCCCTGGTGCCCCCAGAGGCCAGGTCCCCCGGCTCCCTCCTGCCCCACCGGGACCTCCTGCGCCGCATCGTGAGTAGCATCGTCCACCAGAAGACCCCTTCTCCTGGCCCAGCCCCGGCGGGGGCTTCAGACAGCGAAGGGAGGAACACTGCCTGTCCCTGCCCCGCCTCATCGGGGTCCTCGTCCTGCACCCCAGCCGGCCCCCACGCGGCCCCAGCAGCGCTGGACACCGAGCTTCCCGAGGAGCCTTGCCTCCCACAGAAAGAGCCGGCCACTGACGTGTTCACAGCCCCTAATTCCAGGGCCGCCGAGAACGGCGCCCCCGACCCGCCAGAGCCGGAGCCAGATACCGCGCTGCTCCAGGCCCGGTCCACCGCGGAGTGCTGGCCCGAAGGCGGCTCCGTGCCTGCCTGCCTGCCTCTCTTCCGAGGCCAGACGGTCCCTGCCAGTTCCCAGCCATCGAGCCACAGCTTCCAGTGGCTCCGGAACCTGCCGGGCTGTCCCAAAAGCAAAGGCAACAACGTGTTTGTTGTCCACAAGCCCTCGGCCGTGCCCTCGCGGGAGGGCTCCGAGTCTGGCCCGGGACCCAGCAGCGGAAGCCCCTCGGAGGAGTCCCCGCCCGGCCCCGGCGGTGGCCTGGAGGATGCTCTGCCCTTCCCTGCCGCGCTCCTCAGGGTCCCCGCGGAGGCCCCGAGCGACCCCAGGTCGGCCAGCGGGGAAGATGACCCCTGCGCCCCCAAGAAGGTCAAGGTCGACTGCGACTCCTTCCTGTGCCAGAACCCCGGGGAGCCCGGCCTCCAGGAGGCCCAGAAGGCAGGCGGGCTCCCTGCGGATGCCTCGCCGCTCTTCCGCCAGCTCTTCCTCAAGTCGCAGGAACCTCTTGTGAGCCACGAGCAGATGCAGGTGTTCCAGATGATCACCAAGTCCCAGCGGATCTTCTCCCATGCCCAGGTGGCAGCAGTCTCCTCCCAGCTCCCTGCGCCCGAGGGCAAACCAGCCGCCCTGAGGCCGCTGCAGGGGCCGTGGCCGCAGCAGCCCCCACCACTGGCTCCTGCTGTGGACTCTCTCCACGCCGGCCCTGGAAACCCCGAGGCAGAGGGCTCCCCAGCCCGCAGGAGAAAAACCACACCCGGGGTTCCCAGAGAGGCCTCCCCCGGCAGCACGAGACGAGACGCAAAGGGGGGACTGAAAGTGGCCGCGGTTCCAACGCCCCTTGCAGCACCGTCTCTGGACCCTTCCAGGAATCCAGACATCTCTTCTCTGGCCAAGCAGCTGCGATCCTCTAAAGGGACCTTGGACCTGGAGGACATCTTCCCCTCCACAGGCCAACGGCAGACCCAGTTAGGTGGGGAGGAGCCACCAGGAGCCTCGCTGCCAGGGAAGCAGGCCCCAGCCGAGAATGGCGCGGCTTCAAGGATCACAAAAGGTGAAAAGGGCCCAGCCTGCTCCCGGGGTGGAGGCTACCGGCTCTTGGGCAACCCCAGGGCCCCGCGATTCTCCGGCTTCCGGAAAGAGAAGGCGAAGATGGATATGTGCTGTGCGGCTTCTCCGAGCCAGGTAGCCATGGCCTCCTTCTCATCGGCCGGGCCCCCGGCAGATCCCTCCAAGTCCAAGCTGACAATATTCAGCAGAATCCAG
Seq A exon
GTACCAGCTCTCTCTCACGTGGCCTGACCAGAGTGGAGTGAGTTTCCTTTGCATTTGTTAGTTGTCCAGGCATTTTATTTCATTTCAGAGAGTCCCCAGATGCAATTTTACAGAGGAAGGAATTAAGGTTCCGAAAGATTGTGGTTTTCCCCACTAAAAAAAAAAAGACCAGAATGAGGCCAGGTGAGGTGGCTTATGCCTGTAATCCCAGCCCTTTGGGATGGGAGGCTGAAGTGGGGAGACTGCTTGAGCTCAGGAGTTCGAGATCAGCCTAGGCAACATGGCGAAACCCAGTCTCTACCAAAATTTTAAAAAAGTAGCTGGGCGTGGTGGCACACGCCTGTGGTCCCAGCTACTCGAGAGGCTGAGGTGGGGGAGAATCGCTTGAACCTGGAAGATGGAGGTTTCAGTGAGCTGAGATTGTGTCTCTGCACTCCAGCCTGGGCAACAGAGCAAGACCCTGTCTTAAAAAAAAAAAAAAAGATCAACATGAGGATATCCCAGAGTTGTTCAAAACACTGTTATCTCACAAAGCCTTTTTTGCTTTTTTTTTTCTCTTGTTTCCCTTTGGATTTGCCTTTTTAGAATCTTCAGAGGATATGAAGGTAGATGCTCTCTTTCCTTTAAAGATTCCTGCTTGAAATGGCCATGTGTTTTCTGATTGTGAGTCTTGGTTTCCACAAGCACAAGTGGGCACCTGCATCGTGCCCCACACTTAAGCACATTGATAATTATTCACTGGTTCCTCCAGATGTTGTGTTTGGAGGGCCTGGTCCAAAGAGCTCATCCAGGTCTCCTGACTCCATGTCCAACCTGGGCAACATGGCGAAACCCTGTCTCTACCAAAATTTAAAAAAAATTAGTTGGGCATGGTGGTGCACGCCTGTGGTCCCAGCTACTCAGGAGGATGAGTAGCTTCCCATCATACCACAGCTACCTCATTTTTGTTTTGTTAACATCTTTATTATTCAGGTGCCAAATAATGCACCATTTTATTTTTTATATATTTTTTAGAGATGGAGGGGGTCTCGCTATGTTGCCCAGCCTGGTCTTGAACCCCTGGGCTCAAGCAATCCTCTCATCTCGGCCTCCTAAAGTGTTGGGATTACAGGCATGAGCCACCATGCCCAGCCAAATCCACCACTTTATTTTATTTTTTAAATTTATTTTATTTATTTATTTATGATGGAGTCTCACTCTGTCGCCCAGGCTGGAATGCAGTGGTGCTATCTCAGCTCATTGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTCTGCCTCAGCCTCCGAGTAGCTGGGATTACAGGCATGCGCCACCACATCTGGCTAATTTTTGTGTGTTTAGTAGAGACGAGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGAGATTGCAGGTGTGAGCCACTGTGCCTGGCCAAATTTATTTTTGAGACGGAGTCTCTCACTCTGTTGCCCAGGCTGGAGTATAGTGGTGCAATCTTGGCTTACTGCAGCCTCTGCCTCCCAAGTTCAAGCAATTCTCCTGCCTGGGCCTTCCAAGTAGCTGGGATTACAGGCACACATCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGCCAGGGTGTCACTGTGTTGGCCAGGCTGGTCTTTCCTGACCTCAGGTGATGTGCTTGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGTCATGGTGCCTGGCCTGAATACACCATTTTAAAGTGTAGCGTTGGGTAATTTGTAGTATATTCACAAGATCGTGCAACCATCCCCACTCTTTGCCAGAACAGTTTCATCTCCCCAAAAGGAACCCCACATTTCTTAGTTGTCACCCACAATCTCGCCCTCCCCCCAGGGCCTGGCAGCCACGAGTCTCCTTTCTGTCTCTGTGGATGTGTCTGTTCTGGACATTGCATATGAGTGGAATCATGCACTCTGTGGCATTCGTATCTGGCTTCCTTCACTCAGCATGACGTTTTCCAGGCTCATCCGTGGGGTGGCAAACGGCAGAGCTGCATTCCTTTCCATGACTGAGTGATCCTCTGTTGGATGGATAAGGCCGCGTTTTATTTGTCTGTTCATCAGTGGATGGACATTTGGGTTGTTTCCACTTTTTGGCTATTTTGAATATGGTGCTGCTGTGAATATTCACCCATGTACAAATTTTTATGGGGATTTATGTTCTAGGAGTAGAATCGCCAGGTCGTACAGCAGTTCTGTTTTAGGTCTGAGGAACTACTAGGCTGTTTTGCTTGTTTCCTCTTCCCACCCACAGTGTATGAGGGCTCCACATTCTCCATGTCCTCACTAACACTTGTTATTGTCCGTGGTTTGTTTAAATTATAACTACCCTGGCGGGTGTGAAGCAGTATCTCATTGTGGTTTTGATTTGTATTTCCCCGTGGCTGCTGACGTTGAACACCTTTCTGTGTTCTTATTGGCCATCTGTGTATCTTTCTAGAAGAAATGTCTGTTCAGGTCCTTTGCTTATTTTTTAAAATCAGATTACTATTTTTTGAGTTCTCTATATATTCTGGATGCAAGACCCTTATCTGACACATGACTTGCAAATATTCTTTCATTTTGTGGTCTGTCTTTTCACTTTATTTATGATACCATTTGCAGGACAAAAGTTTTTATTTTTTATTTTTTATTTTTTTTTGAGACAGGGTCTCACTGTCACTCAGGCTGGAGTGAAGTTGTACGATCATGGCTCACTGCAACCTTGAACTCCTGGCTCAAGTGATTCTCCCACCTCAGCCTCCTGAGTCGCTGGGACCTCAGGCCCATGCCAGTATGCCAGGCCAATTTTTGTATTTTTTGTAGAGATGGGGTTTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTGAAGCAATCCTCCCACCTCGGCCTCCCAAAGTCCTGGGATCACAGGCATGAGCCACCACGCCTGGCTAAAAGTTTTACATTTTGATGAAGTCTAATTTGTCTGTTTTGCTTTGGTGTCTTATCTAAGAAACCACTGTCTAATCCAAGGTCATGAAGATTTACTCTGATGTTTTCTTCTAAAAGTCTGTAATTTGAGCTCTTCTTGCCTCTTCATTTTGGATGTGTTGGTTCAGATGCATTTTCATCTTCAG
Seq C2 exon
GGTGGAAACATCTACAGGCTCCCCCATCCGGTGAAGGAAGAGAATGTGGCAGGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-ZNF541:NM_001101419:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.817 A=NA C2=0.840
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(30.4=1.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)