HsaINT0187578 @ hg38
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr19:47540893-47545980:-
Coord C1 exon
chr19:47544126-47545980
Coord A exon
chr19:47540952-47544125
Coord C2 exon
chr19:47540893-47540951
Length
3174 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
AGATGCATTTTCATCTTCAGGGT
3' ss Score
8.74
Exon sequences
Seq C1 exon
GACCGGGCACATGCTCACCCACCAGAAGACAAAGCCCTTCGTGTGCATCGAGCAGGGCTGCAGCAAGAGCTACTGCGACTACCGCTCTCTGCGCCGGCACTACGAGGTCCATCACGGCCTGTGCATCCTGAAGGAAGCCCCCCCGGAGGAAGAGGCCTGCGGGGACTCCCCCCACGCCCACGAGTCGGCCGGCCAGCCGCCCCCCAGCAGCCTGCGGTCCCTGGTGCCCCCAGAGGCCAGGTCCCCCGGCTCCCTCCTGCCCCACCGGGACCTCCTGCGCCGCATCGTGAGTAGCATCGTCCACCAGAAGACCCCTTCTCCTGGCCCAGCCCCGGCGGGGGCTTCAGACAGCGAAGGGAGGAACACTGCCTGTCCCTGCCCCGCCTCATCGGGGTCCTCGTCCTGCACCCCAGCCGGCCCCCACGCGGCCCCAGCAGCGCTGGACACCGAGCTTCCCGAGGAGCCTTGCCTCCCACAGAAAGAGCCGGCCACTGACGTGTTCACAGCCCCTAATTCCAGGGCCGCCGAGAACGGCGCCCCCGACCCGCCAGAGCCGGAGCCAGATACCGCGCTGCTCCAGGCCCGGTCCACCGCGGAGTGCTGGCCCGAAGGCGGCTCCGTGCCTGCCTGCCTGCCTCTCTTCCGAGGCCAGACGGTCCCTGCCAGTTCCCAGCCATCGAGCCACAGCTTCCAGTGGCTCCGGAACCTGCCGGGCTGTCCCAAAAGCAAAGGCAACAACGTGTTTGTTGTCCACAAGCCCTCGGCCGTGCCCTCGCGGGAGGGCTCCGAGTCTGGCCCGGGACCCAGCAGCGGAAGCCCCTCGGAGGAGTCCCCGCCCGGCCCCGGCGGTGGCCTGGAGGATGCTCTGCCCTTCCCTGCCGCGCTCCTCAGGGTCCCCGCGGAGGCCCCGAGCGACCCCAGGTCGGCCAGCGGGGAAGATGACCCCTGCGCCCCCAAGAAGGTCAAGGTCGACTGCGACTCCTTCCTGTGCCAGAACCCCGGGGAGCCCGGCCTCCAGGAGGCCCAGAAGGCAGGCGGGCTCCCTGCGGATGCCTCGCCGCTCTTCCGCCAGCTCTTCCTCAAGTCGCAGGAACCTCTTGTGAGCCACGAGCAGATGCAGGTGTTCCAGATGATCACCAAGTCCCAGCGGATCTTCTCCCATGCCCAGGTGGCAGCAGTCTCCTCCCAGCTCCCTGCGCCCGAGGGCAAACCAGCCGCCCTGAGGCCGCTGCAGGGGCCGTGGCCGCAGCAGCCCCCACCACTGGCTCCTGCTGTGGACTCTCTCCACGCCGGCCCTGGAAACCCCGAGGCAGAGGGCTCCCCAGCCCGCAGGAGAAAAACCACACCCGGGGTTCCCAGAGAGGCCTCCCCCGGCAGCACGAGACGAGACGCAAAGGGGGGACTGAAAGTGGCCGCGGTTCCAACGCCCCTTGCAGCACCGTCTCTGGACCCTTCCAGGAATCCAGACATCTCTTCTCTGGCCAAGCAGCTGCGATCCTCTAAAGGGACCTTGGACCTGGAGGACATCTTCCCCTCCACAGGCCAACGGCAGACCCAGTTAGGTGGGGAGGAGCCACCAGGAGCCTCGCTGCCAGGGAAGCAGGCCCCAGCCGAGAATGGCGCGGCTTCAAGGATCACAAAAGGTGAAAAGGGCCCAGCCTGCTCCCGGGGTGGAGGCTACCGGCTCTTGGGCAACCCCAGGGCCCCGCGATTCTCCGGCTTCCGGAAAGAGAAGGCGAAGATGGATATGTGCTGTGCGGCTTCTCCGAGCCAGGTAGCCATGGCCTCCTTCTCATCGGCCGGGCCCCCGGCAGATCCCTCCAAGTCCAAGCTGACAATATTCAGCAGAATCCAG
Seq A exon
GTACCAGCTCTCTCTCACGTGGCCTGACCAGAGTGGAGTGAGTTTCCTTTGCATTTGTTAGTTGTCCAGGCATTTTATTTCATTTCAGAGAGTCCCCAGATGCAATTTTACAGAGGAAGGAATTAAGGTTCCGAAAGATTGTGGTTTTCCCCACTAAAAAAAAAAAGACCAGAATGAGGCCAGGTGAGGTGGCTTATGCCTGTAATCCCAGCCCTTTGGGATGGGAGGCTGAAGTGGGGAGACTGCTTGAGCTCAGGAGTTCGAGATCAGCCTAGGCAACATGGCGAAACCCAGTCTCTACCAAAATTTTAAAAAAGTAGCTGGGCGTGGTGGCACACGCCTGTGGTCCCAGCTACTCGAGAGGCTGAGGTGGGGGAGAATCGCTTGAACCTGGAAGATGGAGGTTTCAGTGAGCTGAGATTGTGTCTCTGCACTCCAGCCTGGGCAACAGAGCAAGACCCTGTCTTAAAAAAAAAAAAAAAGATCAACATGAGGATATCCCAGAGTTGTTCAAAACACTGTTATCTCACAAAGCCTTTTTTGCTTTTTTTTTTCTCTTGTTTCCCTTTGGATTTGCCTTTTTAGAATCTTCAGAGGATATGAAGGTAGATGCTCTCTTTCCTTTAAAGATTCCTGCTTGAAATGGCCATGTGTTTTCTGATTGTGAGTCTTGGTTTCCACAAGCACAAGTGGGCACCTGCATCGTGCCCCACACTTAAGCACATTGATAATTATTCACTGGTTCCTCCAGATGTTGTGTTTGGAGGGCCTGGTCCAAAGAGCTCATCCAGGTCTCCTGACTCCATGTCCAACCTGGGCAACATGGCGAAACCCTGTCTCTACCAAAATTTAAAAAAAATTAGTTGGGCATGGTGGTGCACGCCTGTGGTCCCAGCTACTCAGGAGGATGAGTAGCTTCCCATCATACCACAGCTACCTCATTTTTGTTTTGTTAACATCTTTATTATTCAGGTGCCAAATAATGCACCATTTTATTTTTTATATATTTTTTAGAGATGGAGGGGGTCTCGCTATGTTGCCCAGCCTGGTCTTGAACCCCTGGGCTCAAGCAATCCTCTCATCTCGGCCTCCTAAAGTGTTGGGATTACAGGCATGAGCCACCATGCCCAGCCAAATCCACCACTTTATTTTATTTTTTAAATTTATTTTATTTATTTATTTATGATGGAGTCTCACTCTGTCGCCCAGGCTGGAATGCAGTGGTGCTATCTCAGCTCATTGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTCTGCCTCAGCCTCCGAGTAGCTGGGATTACAGGCATGCGCCACCACATCTGGCTAATTTTTGTGTGTTTAGTAGAGACGAGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGAGATTGCAGGTGTGAGCCACTGTGCCTGGCCAAATTTATTTTTGAGACGGAGTCTCTCACTCTGTTGCCCAGGCTGGAGTATAGTGGTGCAATCTTGGCTTACTGCAGCCTCTGCCTCCCAAGTTCAAGCAATTCTCCTGCCTGGGCCTTCCAAGTAGCTGGGATTACAGGCACACATCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGCCAGGGTGTCACTGTGTTGGCCAGGCTGGTCTTTCCTGACCTCAGGTGATGTGCTTGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGTCATGGTGCCTGGCCTGAATACACCATTTTAAAGTGTAGCGTTGGGTAATTTGTAGTATATTCACAAGATCGTGCAACCATCCCCACTCTTTGCCAGAACAGTTTCATCTCCCCAAAAGGAACCCCACATTTCTTAGTTGTCACCCACAATCTCGCCCTCCCCCCAGGGCCTGGCAGCCACGAGTCTCCTTTCTGTCTCTGTGGATGTGTCTGTTCTGGACATTGCATATGAGTGGAATCATGCACTCTGTGGCATTCGTATCTGGCTTCCTTCACTCAGCATGACGTTTTCCAGGCTCATCCGTGGGGTGGCAAACGGCAGAGCTGCATTCCTTTCCATGACTGAGTGATCCTCTGTTGGATGGATAAGGCCGCGTTTTATTTGTCTGTTCATCAGTGGATGGACATTTGGGTTGTTTCCACTTTTTGGCTATTTTGAATATGGTGCTGCTGTGAATATTCACCCATGTACAAATTTTTATGGGGATTTATGTTCTAGGAGTAGAATCGCCAGGTCGTACAGCAGTTCTGTTTTAGGTCTGAGGAACTACTAGGCTGTTTTGCTTGTTTCCTCTTCCCACCCACAGTGTATGAGGGCTCCACATTCTCCATGTCCTCACTAACACTTGTTATTGTCCGTGGTTTGTTTAAATTATAACTACCCTGGCGGGTGTGAAGCAGTATCTCATTGTGGTTTTGATTTGTATTTCCCCGTGGCTGCTGACGTTGAACACCTTTCTGTGTTCTTATTGGCCATCTGTGTATCTTTCTAGAAGAAATGTCTGTTCAGGTCCTTTGCTTATTTTTTAAAATCAGATTACTATTTTTTGAGTTCTCTATATATTCTGGATGCAAGACCCTTATCTGACACATGACTTGCAAATATTCTTTCATTTTGTGGTCTGTCTTTTCACTTTATTTATGATACCATTTGCAGGACAAAAGTTTTTATTTTTTATTTTTTATTTTTTTTTGAGACAGGGTCTCACTGTCACTCAGGCTGGAGTGAAGTTGTACGATCATGGCTCACTGCAACCTTGAACTCCTGGCTCAAGTGATTCTCCCACCTCAGCCTCCTGAGTCGCTGGGACCTCAGGCCCATGCCAGTATGCCAGGCCAATTTTTGTATTTTTTGTAGAGATGGGGTTTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTGAAGCAATCCTCCCACCTCGGCCTCCCAAAGTCCTGGGATCACAGGCATGAGCCACCACGCCTGGCTAAAAGTTTTACATTTTGATGAAGTCTAATTTGTCTGTTTTGCTTTGGTGTCTTATCTAAGAAACCACTGTCTAATCCAAGGTCATGAAGATTTACTCTGATGTTTTCTTCTAAAAGTCTGTAATTTGAGCTCTTCTTGCCTCTTCATTTTGGATGTGTTGGTTCAGATGCATTTTCATCTTCAG
Seq C2 exon
GGTGGAAACATCTACAGGCTCCCCCATCCGGTGAAGGAAGAGAATGTGGCAGGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156:ENST00000391901:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=NA C2=0.854
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(30.4=1.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains