GgaINT0002602 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:33245422-33246129:+
Coord C1 exon
chrUn_random:33245422-33245739
Coord A exon
chrUn_random:33245740-33245815
Coord C2 exon
chrUn_random:33245816-33246129
Length
76 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GGGACTTCCCCCCATTGCAGGGA
3' ss Score
8.18
Exon sequences
Seq C1 exon
GCCCGCCTCACAACGCATCTCTAAGACTGGTGGGTGGAGGGAGCCGGTGCGACGGGCGCGTGGAGATCTTCCAGCGCGGGACATGGGGCAGAGTCCTGGATGATCAGTGGGACATGGAGGACGCTAGCGTGGTGTGCCGGCAGCTGCGCTGCGGGGAGGCAGAGGCAGCCTACACTGTGCCGAGGGCCGAGCGAGGGACGGGCCCCGCGGGGCTGCGCGGGGTGCGGTGTGCAGGCCACGAGGCCAGCCTGAGCCTCTGCAACACATCCCTGCCCGAGGCCACGGCGATCATGGAGGACGTGGGGGCCGTGTGCCAGG
Seq A exon
GTGAGCAGCGCGTCCTCTAGATGCAGGACTGGGCGGGCAGACAGCCTCTGACAGCTGGGACTTCCCCCCATTGCAG
Seq C2 exon
GGAGCCGCCAGGTCCGGCTGGTGGACGGGGCTGGGCGATGTGCAGGGAGAGTGGAGATCTACTACCGGGGGCAGTGGGGCACGGTCTGCGACGATGCCTGGGACACGGCCGACGCCAACGTGGTTTGCCGCCAGCTGAGCTGCGGATGGGCCGTGGAGGCGGCCGGCTCGGCTCGCTTTGGGGAGGGCTCCGGGCACATCTGGCTGGATGGCGTGAACTGCTCTGGGGACGAAACTGCTCTCTGGAACTGCTCTGCTGAGGCCTGGGGACAGCACGACTGCGGGCACAAGGAGGATGCGGGAGTCGTCTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022257:ENSGALT00000020541:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCTCTGCAACACATCC
R:
GTGTCCCAGGCATCGTCG
Band lengths:
176-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]