GgaINT0002791 @ galGal3
Intron Retention
Gene
ENSGALG00000013286 | KDM2A
Description
NA
Coordinates
chrUn_random:27634979-27636350:-
Coord C1 exon
chrUn_random:27636272-27636350
Coord A exon
chrUn_random:27635026-27636271
Coord C2 exon
chrUn_random:27634979-27635025
Length
1246 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GCAAGGTGTTTGTCCCGCAGGAT
3' ss Score
7.52
Exon sequences
Seq C1 exon
ACTTTACAGTTGAATACATCCAGCGAGGTGGCCTGAGAGACCCCCTCATCTTCAGGAGCTCTGATGGCCTGGGTATAAA
Seq A exon
GTAAGTGTTGGAGCACAGAGCAGTGGGTGGCTCTGGCCTGATTTCCTGCCTGACTCCATGTCACAGGCAGTCTGATGCTGGTCACTGGATCTGTGGTTTGCCAAGCTGGTAGGACTGTGCCCTGTCCACACTGTTGAGAACATCTTCCATCTCACATATCCTATTGTTACTAGTCTGCTTGGGCTTAAAATGAGAGGACTGATTTGGCTGTATGTGATCACAGTTCAAGCAAGTACCTGGCAAATGTTACTACTGCTCTGAGGCAACATCTGGCTTGTTTGGGTTTTTTTGCCTAATAATGCAGGCAAATGTTGCCAGATACTCTACAAAAAACTGACTATCTGTCATTTTCCATAAGTCAAACCTGGTCTGCCCAACATGTTTACTGCTAAGTTGCCATCTCTCTCTTGCTACAGTAAGTCAGTTAAGATTTACTATTTTGAGTATAAAGCTGCACTGATTCAAGATTTTGTACTGTTCAGTGGTGTACCTGCTGTGTTGGTGTGTATATACAGCAGGGTAGGATATGTAGTTTTAGGGCAGGTAACACTACCTCAAAACATTACTGCTGTCAAGCTGAAGGAATAACTTGGCTTTAGCAAACTTTGTCAGAACCACCATCAGCACCACCGTTGTTAAATTCTTTGGCTAGCTATGAAAGAATGGACAGTACATCACGGAATGCATGGTACACTGTGCTGTGATGAATGTGTGAAGAAGTGGTGCCAGGCTCAGTCTTAACAGCTGGCTGACTTGGGAGGGCACATATTTGGTACTGAGGGTTACAGTGTGGGTGAAACAGGATTTCCTTGAGCTTTTGGTTATTCCTCTGGGTCTGGGGCTGCTTGAATGACTGCCTGCCTATTGTGCTTGTGACAGCAGCATTTGTGTAGATACAGTCAGAGTAGTTATGTTGTATTAGTGAGTATACTGCTTCTACTAGTCTAGTTGTCTCCTCTGTACTGAGACAACCCATGCAAAGAGTCTTTAAAATGAGAGCTGGGATTGCTTAGTTCAATTCATTTGCCAGAAGTCACTGTGCTCTGTAGGGGTCATATCCTGTTCCCAAATCACTCTTGCTTACCCAGAGTTGTGCCACTAGAGATCTAGATGCATGGTACTCGTCTATATCTTCACCTACACCCTTCAGACAAAAAAGAAGTGGGGATGAGAAGAGGTTACAGGTGGGAGGAGTAAACAAACAGAAGTGCTTCATGACTTTTTTAGCAAGGTGTTTGTCCCGCAG
Seq C2 exon
GATGCCAGATCCGGACTTCATCGTGAACGATGTGCGGCTGTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013286:ENSGALT00000021696:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]