RnoINT0078347 @ rn6
Intron Retention
Gene
ENSRNOG00000019145 | Kdm2a
Description
lysine demethylase 2A [Source:RGD Symbol;Acc:1309419]
Coordinates
chr1:219607125-219607635:-
Coord C1 exon
chr1:219607557-219607635
Coord A exon
chr1:219607172-219607556
Coord C2 exon
chr1:219607125-219607171
Length
385 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TACTGGTGTTTATTTCATAGGAT
3' ss Score
7.9
Exon sequences
Seq C1 exon
ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA
Seq A exon
GTAAGTGCTCTGGTCCTCGCGTGAGATGGTTGCTAATGGCTTTTACACTCAGAGGTCCAGATAGTGGCGATCTTGAGAACCCAGAGCAGTAGGTAATTGAAAATAACTTCCCCGTTACTTTGTGAAATATGTTTCTTGTTTCACAGGTGATTCATATACCTATAAATGAAAACTATAGATGAGCTTAAAAGAAGTTTTAAGTCTCTTGAATCTATCAGTCTGATATAATTGCTGCTGACATTGTGGGATTTCTTCCTATATATTTGAAAACTATTTAAACCTGAACACGAAGATTGATTGATATTTCTGGAAAGTGCTTCATATTTTCCAGATCCACACTGACTAGAGAAGTAATGCTTCTCGTTTACTGGTGTTTATTTCATAG
Seq C2 exon
GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019145:ENSRNOT00000054850:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]