MmuINT0086121 @ mm10
Intron Retention
Gene
ENSMUSG00000054611 | Kdm2a
Description
lysine (K)-specific demethylase 2A [Source:MGI Symbol;Acc:MGI:1354736]
Coordinates
chr19:4361538-4362055:-
Coord C1 exon
chr19:4361977-4362055
Coord A exon
chr19:4361585-4361976
Coord C2 exon
chr19:4361538-4361584
Length
392 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TACTGGTGTTTATTTCACAGGAT
3' ss Score
8.11
Exon sequences
Seq C1 exon
ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA
Seq A exon
GTAAGTGCTCTCTGGTCCTAAGCCTGAGATGGTTGTAAAATGGCTTTTACACCCGGGAATTCGGACAGTGGCAAATTTGAGACCCCAGAGCAGTAGGAAATTGAGGATAATTTCCCAGTTACTTTGTGAAGTATGACTCTTGTCTCACTGGTGATTCATATACCTAGAAATAAAAACTGTAGATGAACTTAAAAACCAGTTAAGTCTCTTGAGTCTATCAGTCTGATAGAATTGCTGCTAACATTGTGGGATTTCTTCCTATAAAAATGTGTAATCATTTATATTTTAAAAGTATTTAAACTTAATGGTGTTTCTGGAAAGTGCTTCATACTTTCCAGATCCACACTGACTGGAGAAGAAGTGCTTCTTATTTACTGGTGTTTATTTCACAG
Seq C2 exon
GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054611:ENSMUST00000047898:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types